Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17760 - ( damaged DNA binding / exodeoxyribonuclease III )
25 Proteins interacs with AT4G17760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G60640 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT1G08450 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | CRT3 (CALRETICULIN 3) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT5G03160 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.1142
| Unknown | ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) BINDING / HEAT SHOCK PROTEIN BINDING |
AT5G45970 | Predictedtwo hybrid | FSW = 0.0305
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G54280 | Predictedtwo hybrid | FSW = 0.1067
| Unknown | ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR |
AT5G56290 | Predictedtwo hybrid | FSW = 0.0099
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT3G13445 | Predictedtwo hybrid | FSW = 0.0021
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G29570 | Predictedtwo hybrid | FSW = 0.0419
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT5G35530 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT4G15940 | Predictedtwo hybrid | FSW = 0.0408
| Unknown | FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN |
AT2G35520 | Predictedtwo hybrid | FSW = 0.0952
| Unknown | DAD2 (DEFENDER AGAINST CELL DEATH 2) |
AT5G66130 | Predictedin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.0347
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT1G77440 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G03340 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT3G20050 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT2G14835 | Predictedtwo hybrid | FSW = 0.1429
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G13330 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | BINDING |
AT3G27120 | Predictedtwo hybrid | FSW = 0.0816
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G05480 | Predictedin vivoin vitroAffinity Capture-MStwo hybridReconstituted ComplexAffinity Capture-Western | FSW = 0.2376
| Unknown | RAD9 |
AT4G32180 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE |
AT4G34050 | Predictedtwo hybrid | FSW = 0.0315
| Unknown | CAFFEOYL-COA 3-O-METHYLTRANSFERASE PUTATIVE |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G46030 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | UNKNOWN PROTEIN |
AT5G10090 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0595
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G52530 | Predictedin vivo | FSW = 0.2933
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 7 PLANT STRUCTURES EXPRESSED DURING F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S HUS1-LIKE PROTEIN (INTERPROIPR007150) HAS 88 BLAST HITS TO 87 PROTEINS IN 31 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 51 FUNGI - 6 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 10 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454