Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19210 - ( ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP binding / DNA binding / helicase/ nucleic acid binding )

91 Proteins interacs with AT3G19210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G09080

Experimental

FSW = 0.0284

Class B:

plastid

nucleus

 TOC75-IV
AT2G26300

Experimental

FSW = 0.0069

Class B:

plasma membrane

nucleus

 GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT5G20850

Experimental

two hybrid

one hybrid

two hybrid

FSW = 0.4024

Unknown

 ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
YER095WExperimental

two hybrid

FSW = 0.0426

Unknown

 ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G16640

Predicted

Affinity Capture-MS

FSW = 0.0211

Class C:

nucleus

 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
AT1G56070

Predicted

two hybrid

FSW = 0.0201

Class C:

nucleus

 LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT2G06510

Predicted

Phenotypic Enhancement

FSW = 0.1231

Class C:

nucleus

 RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT5G43530

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2896

Class C:

nucleus

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT3G48750

Predicted

Synthetic Lethality

FSW = 0.0138

Class C:

nucleus

 CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G67270

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1763

Class C:

nucleus

 ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G24490

Predicted

Phenotypic Enhancement

FSW = 0.1061

Class C:

nucleus

 RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT1G05120

Predicted

Phenotypic Enhancement

FSW = 0.0374

Class C:

nucleus

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT5G22750

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3053

Class C:

nucleus

 RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G26150

Predicted

synthetic growth defect

FSW = 0.1533

Class C:

nucleus

 ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G07370

Predicted

Phenotypic Enhancement

FSW = 0.2903

Class C:

nucleus

 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65470

Predicted

Phenotypic Enhancement

FSW = 0.2422

Class C:

nucleus

 FAS1 (FASCIATA 1) HISTONE BINDING
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0319

Class C:

nucleus

 FZF TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.0950

Class C:

nucleus

 TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G08630

Predicted

Phenotypic Enhancement

FSW = 0.0802

Class C:

nucleus

 DDT DOMAIN-CONTAINING PROTEIN
AT2G43810

Predicted

synthetic growth defect

FSW = 0.1476

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0614

Class C:

nucleus

 TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G19120

Predicted

synthetic growth defect

FSW = 0.2125

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Synthetic Lethality

FSW = 0.1776

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G47520

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0051

Unknown

 MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G28190

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2232

Unknown

 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1731

Unknown

 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G12520

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2894

Unknown

 ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
ATCG00830Predicted

synthetic growth defect

FSW = 0.0215

Unknown

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT3G12110

Predicted

Phenotypic Enhancement

FSW = 0.0108

Unknown

 ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G44950

Predicted

synthetic growth defect

FSW = 0.2131

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G35940Predicted

Synthetic Lethality

FSW = 0.2466

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G53240

Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

 MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL
AT3G47690

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1487

Unknown

 ATEB1A MICROTUBULE BINDING
AT5G41150

Predicted

Phenotypic Enhancement

FSW = 0.1473

Unknown

 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G31970

Predicted

Phenotypic Suppression

FSW = 0.4769

Unknown

 RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G66130

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.2376

Unknown

 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G53360

Predicted

two hybrid

FSW = 0.0034

Unknown

 SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN
AT1G08830

Predicted

Synthetic Lethality

FSW = 0.2142

Unknown

 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT5G05780

Predicted

two hybrid

FSW = 0.0238

Unknown

 RPN8A (RP NON-ATPASE SUBUNIT 8A)
AT5G09640

Predicted

two hybrid

FSW = 0.0199

Unknown

 SCPL19 SERINE-TYPE CARBOXYPEPTIDASE/ SINAPOYLTRANSFERASE
AT1G10930

Predicted

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Suppression

Shared biological function

Enriched domain pair

FSW = 0.2928

Unknown

 RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G05740

Predicted

Phenotypic Enhancement

FSW = 0.0582

Unknown

 RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G04020

Predicted

synthetic growth defect

FSW = 0.3414

Unknown

 BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.3793

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G60490

Predicted

synthetic growth defect

FSW = 0.1651

Unknown

 ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G66740

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3309

Unknown

 SGA2
AT1G67190

Predicted

synthetic growth defect

FSW = 0.2541

Unknown

 F-BOX FAMILY PROTEIN
AT1G80410

Predicted

synthetic growth defect

FSW = 0.1969

Unknown

 EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

synthetic growth defect

FSW = 0.2538

Unknown

 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G44580

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.4030

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT3G02820

Predicted

synthetic growth defect

FSW = 0.3214

Unknown

 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G12400

Predicted

synthetic growth defect

FSW = 0.2040

Unknown

 ELC UBIQUITIN BINDING
AT3G13440

Predicted

synthetic growth defect

FSW = 0.0513

Unknown

 METHYLTRANSFERASE/ NUCLEIC ACID BINDING
AT1G54140

Predicted

Phenotypic Enhancement

FSW = 0.0426

Unknown

 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G63160

Predicted

Phenotypic Enhancement

FSW = 0.1219

Unknown

 REPLICATION FACTOR C 40 KDA PUTATIVE
AT3G06910

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0619

Unknown

 ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.0746

Unknown

 HDA15 HISTONE DEACETYLASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.2125

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.1105

Unknown

 CDC45 (CELL DIVISION CYCLE 45)
AT3G42660

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.4139

Unknown

 NUCLEOTIDE BINDING
AT3G58560

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.2341

Unknown

 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G25120Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

synthetic growth defect

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.3762

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870

Predicted

two hybrid

synthetic growth defect

Affinity Capture-Western

synthetic growth defect

FSW = 0.2574

Unknown

 MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G38630

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1336

Unknown

 RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1942

Unknown

 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10390Predicted

Affinity Capture-Western

FSW = 0.0757

Unknown

 HISTONE H3
AT5G10400Predicted

Affinity Capture-Western

FSW = 0.0678

Unknown

 HISTONE H3
AT5G10960

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2386

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.2330

Unknown

 GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.4023

Unknown

 ENDONUCLEASE PUTATIVE
AT5G41880

Predicted

Phenotypic Enhancement

FSW = 0.1140

Unknown

 POLA3 DNA PRIMASE
AT5G44750

Predicted

Phenotypic Enhancement

FSW = 0.0469

Unknown

 REV1 DNA-DIRECTED DNA POLYMERASE
AT5G57160

Predicted

Phenotypic Enhancement

FSW = 0.0105

Unknown

 ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G63920

Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

FSW = 0.2864

Unknown

 DNA TOPOISOMERASE III ALPHA PUTATIVE
AT4G11920

Predicted

synthetic growth defect

FSW = 0.1880

Unknown

 CCS52A2 SIGNAL TRANSDUCER
AT4G26780

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0041

Unknown

 AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.2116

Unknown

 CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G27740

Predicted

Phenotypic Enhancement

FSW = 0.1786

Unknown

 EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G27970Predicted

synthetic growth defect

FSW = 0.1789

Unknown

 BINDING
AT5G41700

Predicted

Phenotypic Enhancement

FSW = 0.0839

Unknown

 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G05540

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT1G55255Predicted

synthetic growth defect

FSW = 0.1602

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT2G23420

Predicted

synthetic growth defect

FSW = 0.2001

Unknown

 NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G14400

Predicted

synthetic growth defect

FSW = 0.2314

Unknown

 UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT2G44065

Predicted

synthetic growth defect

FSW = 0.0533

Unknown

 RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT3G07120

Predicted

synthetic growth defect

FSW = 0.2463

Unknown

 ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G15920

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2459

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT3G52000

Predicted

two hybrid

FSW = 0.0100

Unknown

 SCPL36 (SERINE CARBOXYPEPTIDASE-LIKE 36) SERINE-TYPE CARBOXYPEPTIDASE
AT2G45000

Predicted

two hybrid

FSW = 0.0175

Unknown

 EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT3G11270

Predicted

two hybrid

FSW = 0.0300

Unknown

 MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT2G41980

Predicted

two hybrid

FSW = 0.0074

Unknown

 SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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