Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09640 - ( SCPL19 serine-type carboxypeptidase/ sinapoyltransferase )
15 Proteins interacs with AT5G09640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G12910 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3344
| Unknown | SCPL20 (SERINE CARBOXYPEPTIDASE-LIKE 20) SERINE-TYPE CARBOXYPEPTIDASE |
AT4G30810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3344
| Unknown | SCPL29 (SERINE CARBOXYPEPTIDASE-LIKE 29) SERINE-TYPE CARBOXYPEPTIDASE |
ATCG00480 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | CHLOROPLAST-ENCODED GENE FOR BETA SUBUNIT OF ATP SYNTHASE |
AT4G32830 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G19210 | Predictedtwo hybrid | FSW = 0.0199
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G30610 | PredictedGene fusion methodCo-expression | FSW = 0.3323
| Unknown | BRS1 (BRI1 SUPPRESSOR 1) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G33530 | PredictedGene fusion methodCo-expression | FSW = 0.1696
| Unknown | SCPL46 (SERINE CARBOXYPEPTIDASE-LIKE 46) SERINE-TYPE CARBOXYPEPTIDASE |
AT3G51130 | Predictedtwo hybrid | FSW = 0.1895
| Unknown | UNKNOWN PROTEIN |
AT5G16270 | Predictedtwo hybrid | FSW = 0.0287
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT3G25420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4181
| Unknown | SCPL21 (SERINE CARBOXYPEPTIDASE-LIKE 21) SERINE-TYPE CARBOXYPEPTIDASE |
AT3G17180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3140
| Unknown | SCPL33 (SERINE CARBOXYPEPTIDASE-LIKE 33) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G05850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3658
| Unknown | SCPL38 (SERINE CARBOXYPEPTIDASE-LIKE 38) SERINE-TYPE CARBOXYPEPTIDASE |
AT1G61130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3205
| Unknown | SCPL32 (SERINE CARBOXYPEPTIDASE-LIKE 32) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G22970 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3578
| Unknown | SERINE CARBOXYPEPTIDASE S10 FAMILY PROTEIN |
AT3G52000 | PredictedPhylogenetic profile method | FSW = 0.3897
| Unknown | SCPL36 (SERINE CARBOXYPEPTIDASE-LIKE 36) SERINE-TYPE CARBOXYPEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454