Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G05120 - ( SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein )
45 Proteins interacs with AT1G05120| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G13440
   | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0272
| Class C:nucleus | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0213
| Class C:nucleus | HISTONE H4 |
| AT5G43530
| PredictedPhenotypic Enhancement | FSW = 0.0272
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT1G07790
| PredictedAffinity Capture-MS | FSW = 0.0311
| Class C:nucleus | HTB1 DNA BINDING |
| AT2G30260
| Predictedtwo hybrid | FSW = 0.0197
| Class C:nucleus | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G09860
| PredictedPhenotypic Enhancement | FSW = 0.0822
| Class C:nucleus | NUCLEAR MATRIX PROTEIN-RELATED |
| AT1G06960
| Predictedinterologs mappingtwo hybridinteraction prediction | FSW = 0.0256
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
| AT5G22750
| PredictedPhenotypic Enhancement | FSW = 0.0261
| Class C:nucleus | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT4G02070
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0446
| Class C:nucleus | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
| AT2G38810
| Predictedinteraction prediction | FSW = 0.0613
| Class C:nucleus | HTA8 (HISTONE H2A 8) DNA BINDING |
| AT1G20580
| Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0057
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G18760
| PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0916
| Class C:nucleus | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT3G19210
| PredictedPhenotypic Enhancement | FSW = 0.0374
| Class C:nucleus | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT1G02680
| PredictedPhenotypic Suppression | FSW = 0.0287
| Class C:nucleus | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | HISTONE H4 |
| AT1G11910
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0133
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT1G64200
| PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT4G04350
| Predictedinteraction prediction | FSW = 0.0139
| Unknown | EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G64190
| PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
| AT3G03330
| PredictedAffinity Capture-MS | FSW = 0.0463
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT1G16300
| PredictedAffinity Capture-MS | FSW = 0.0350
| Unknown | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT5G41670
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0408
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
| AT2G25490
| Predictedinteraction prediction | FSW = 0.0144
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G16190
| PredictedPhenotypic Enhancement | FSW = 0.0099
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G38470
| PredictedPhenotypic Enhancement | FSW = 0.0133
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT1G08780
| PredictedPhenotypic Enhancement | FSW = 0.0264
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
| AT1G24706
| PredictedPhenotypic Enhancement | FSW = 0.0241
| Unknown | UNKNOWN PROTEIN |
| AT1G29990
| PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0430
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
| AT1G55300
| PredictedPhenotypic Suppression | FSW = 0.0141
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT2G06040
| PredictedCo-purificationAffinity Capture-Westerntwo hybridAffinity Capture-WesternCo-purificationAffinity Capture-WesternCo-purificationco-fractionationCo-fractionationAffinity Capture-MSReconstituted Complex | FSW = 0.1481
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
| AT5G45140
| PredictedPhenotypic Enhancement | FSW = 0.0503
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT5G49510
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0409
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
| AT5G59140
| PredictedAffinity Capture-WesternCo-purification | FSW = 0.0893
| Unknown | SKP1 FAMILY PROTEIN |
| AT5G63920
| PredictedPhenotypic Enhancement | FSW = 0.0935
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
| AT1G10930
| Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Westerninteraction predictionEnriched domain pair | FSW = 0.0503
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G26830
| PredictedCo-purification | FSW = 0.0203
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G52740
| PredictedAffinity Capture-MS | FSW = 0.0461
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT3G04600
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0690
| Unknown | TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN |
| AT3G08560
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0272
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G20790
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0207
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
| AT4G04210
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0355
| Unknown | PUX4 PROTEIN BINDING |
| AT4G04460
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0208
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT5G09620
| PredictedPhenotypic Enhancement | FSW = 0.0759
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
| AT4G15475
| Predictedtwo hybridCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationCo-purificationReconstituted Complextwo hybrid | FSW = 0.1129
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
| AT3G53650
| Predictedinteraction prediction | FSW = 0.0171
| Unknown | HISTONE H2B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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