Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11910 - ( aspartyl protease family protein )

22 Proteins interacs with AT1G11910
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G03490

Experimental

FSW = 0.0183

Class B:

vacuole

peroxisome

 PEX19-1 (PEROXIN 19-1)
AT5G11060

Experimental

two hybrid

FSW = 0.2970

Class B:

vacuole

nucleus

Class D:

plastid (p = 0.78)

 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT4G32040

Experimental

two hybrid

FSW = 0.2949

Class B:

vacuole

nucleus

Class D:

plastid (p = 0.78)

 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G75410

Experimental

two hybrid

FSW = 0.2581

Class B:

vacuole

nucleus

Class D:

plastid (p = 0.78)

 BLH3 (BEL1-LIKE HOMEODOMAIN 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G25220

Experimental

two hybrid

FSW = 0.3059

Class B:

vacuole

nucleus

Class D:

plastid (p = 0.78)

 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT4G32980

Experimental

two hybrid

FSW = 0.3253

Class B:

vacuole

nucleus

 ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT4G08150

Experimental

two hybrid

FSW = 0.3176

Class B:

vacuole

nucleus

 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) TRANSCRIPTION FACTOR
AT1G62990

Experimental

two hybrid

FSW = 0.2841

Class B:

vacuole

nucleus

 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G41410

Experimental

two hybrid

FSW = 0.4180

Unknown

 BEL1 (BELL 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G35940

Experimental

two hybrid

FSW = 0.1757

Unknown

 BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR
AT2G23760

Experimental

two hybrid

FSW = 0.3164

Unknown

 BLH4 (BEL1-LIKE HOMEODOMAIN 4) DNA BINDING / TRANSCRIPTION FACTOR
AT3G10410

Predicted

Synthetic Rescue

FSW = 0.0381

Class C:

vacuole

 SCPL49 (SERINE CARBOXYPEPTIDASE-LIKE 49) SERINE-TYPE CARBOXYPEPTIDASE
AT3G51730

Predicted

Affinity Capture-MS

in vivo

Enriched domain pair

Co-expression

FSW = 0.1280

Class C:

vacuole

 SAPOSIN B DOMAIN-CONTAINING PROTEIN
AT1G62290

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1600

Class C:

vacuole

 ASPARTYL PROTEASE FAMILY PROTEIN
AT2G41670

Predicted

two hybrid

FSW = 0.0381

Unknown

 GTP-BINDING FAMILY PROTEIN
AT5G58000

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0659

Unknown

 LOCATED IN ENDOPLASMIC RETICULUM CHLOROPLAST CONTAINS INTERPRO DOMAIN/S RETICULON (INTERPROIPR003388) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RETICULON FAMILY PROTEIN (TAIRAT4G284301) HAS 1047 BLAST HITS TO 1034 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 715 FUNGI - 46 PLANTS - 58 VIRUSES - 4 OTHER EUKARYOTES - 222 (SOURCE NCBI BLINK)
AT1G05120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0133

Unknown

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0055

Unknown

 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G01800

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0334

Unknown

 SAPOSIN B DOMAIN-CONTAINING PROTEIN
AT3G05310

Predicted

Phenotypic Enhancement

FSW = 0.0345

Unknown

 MIRO3 GTP BINDING
AT1G03840

Predicted

Gene fusion method

FSW = 0.0554

Unknown

 MGP (MAGPIE) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G18475

Predicted

Gene fusion method

FSW = 0.0923

Unknown

 PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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