Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64200 - ( VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) proton-transporting ATPase rotational mechanism )

20 Proteins interacs with AT1G64200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78900

Predicted

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.2616

Class C:

vacuole

 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G42050

Predicted

Affinity Capture-MS

Co-purification

in vitro

two hybrid

FSW = 0.4449

Class C:

vacuole

 VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN
AT2G21410

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.4201

Class C:

vacuole

 VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT1G20260

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.1616

Class C:

vacuole

 HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G12840

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3269

Class C:

vacuole

 DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G01390

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

Reconstituted Complex

FSW = 0.4000

Class C:

vacuole

 VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT4G11150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1024

Class C:

vacuole

 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G28710

Predicted

two hybrid

FSW = 0.0814

Class C:

vacuole

 H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT4G02620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4321

Class C:

vacuole

 VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT3G58730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3899

Class C:

vacuole

 VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT2G36460

Predicted

in vitro

FSW = 0.0410

Unknown

 FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0205

Unknown

 ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT1G05120

Predicted

Affinity Capture-MS

FSW = 0.0306

Unknown

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G20140

Predicted

Affinity Capture-Western

FSW = 0.0574

Unknown

 ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G60620

Predicted

Affinity Capture-MS

FSW = 0.0267

Unknown

 ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G32610

Predicted

synthetic growth defect

FSW = 0.0409

Unknown

 HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0212

Unknown

 GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0232

Unknown

 EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT3G18430

Predicted

Synthetic Lethality

FSW = 0.1605

Unknown

 CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G08560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5895

Unknown

 VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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