Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12840 - ( DET3 (DE-ETIOLATED 3) proton-transporting ATPase rotational mechanism )
18 Proteins interacs with AT1G12840| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G35410
   | Experimentalinteraction detection method | FSW = 0.1042
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
| AT5G41990
| Experimentaltwo hybridfar western blotting | FSW = 0.0381
| Unknown | WNK8 (WITH NO LYSINE (K) KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G78900
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Class C:vacuoleplasma membrane | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT1G76030
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3227
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
| AT3G58730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2874
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
| AT2G21410
| Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.2873
| Class C:vacuole | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
| AT1G20260
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1149
| Class C:vacuole | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT1G64200
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.3269
| Class C:vacuole | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G44110
| Predictedtwo hybridtwo hybrid | FSW = 0.0206
| Class C:plasma membrane | ATJ3 PROTEIN BINDING |
| AT1G07670
| Predictedsynthetic growth defect | FSW = 0.0278
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
| AT3G21700
| PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | SGP2 GTP BINDING |
| AT5G54840
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0149
| Unknown | SGP1 GTP BINDING |
| AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
| AT2G02760
| Predictedsynthetic growth defect | FSW = 0.0267
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
| AT2G37550
| PredictedSynthetic Lethality | FSW = 0.0277
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
| AT3G08560
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2963
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G18430
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1087
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT1G14400
| Predictedsynthetic growth defect | FSW = 0.0289
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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