Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18760 - ( CHR8 (chromatin remodeling 8) ATP binding / DNA binding / helicase/ nucleic acid binding )
67 Proteins interacs with AT2G18760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G07950 | PredictedPhenotypic Enhancement | FSW = 0.0175
| Class C:nucleus | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT4G21010 | Predictedin vitro | FSW = 0.0360
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G75230 | PredictedPhenotypic Enhancement | FSW = 0.0228
| Class C:nucleus | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G16980 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Class C:nucleus | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G35910 | Predictedsynthetic growth defect | FSW = 0.0452
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT1G03190 | PredictedAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.1069
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G05120 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0916
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G35670 | PredictedPhenotypic Suppression | FSW = 0.0207
| Class C:nucleus | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.0251
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0159
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.0118
| Class C:nucleus | FZF TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.1215
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G06210 | PredictedPhenotypic Suppression | FSW = 0.0443
| Class C:nucleus | ELF8 (EARLY FLOWERING 8) BINDING |
AT4G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Class C:nucleus | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G78900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0201
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G47520 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0068
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G05710 | PredictedAffinity Capture-MS | FSW = 0.0527
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
AT1G54270 | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.0340
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT4G26970 | Predictedinteraction prediction | FSW = 0.0264
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT4G35800 | Predictedin vitro | FSW = 0.0925
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G35830 | PredictedAffinity Capture-MS | FSW = 0.0590
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
AT3G03330 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G11890 | PredictedSynthetic Lethality | FSW = 0.0296
| Unknown | SEC22 TRANSPORTER |
AT3G18524 | PredictedPhenotypic Enhancement | FSW = 0.1451
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G57720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G15870 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G02050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0062
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G47770 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0300
| Unknown | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G53240 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT3G28030 | PredictedPhenotypic Enhancement | FSW = 0.0670
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT5G54260 | PredictedPhenotypic Suppression | FSW = 0.0345
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0092
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G38470 | PredictedPhenotypic Enhancement | FSW = 0.0264
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT2G45790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0181
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G20330 | Predictedin vitro | FSW = 0.0145
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G02120 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | VAD1 (VASCULAR ASSOCIATED DEATH1) |
AT1G07705 | PredictedPhenotypic Enhancement | FSW = 0.0381
| Unknown | TRANSCRIPTION REGULATOR |
AT1G26830 | PredictedPhenotypic Enhancement | FSW = 0.0141
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G79730 | PredictedPhenotypic Suppression | FSW = 0.0611
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G06040 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1508
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT1G10930 | Predictedsynthetic growth defectEnriched domain pair | FSW = 0.0171
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G59890 | PredictedSynthetic Lethality | FSW = 0.0557
| Unknown | SNL5 (SIN3-LIKE 5) |
AT3G21060 | PredictedSynthetic Lethality | FSW = 0.0396
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G09620 | PredictedCo-purificationPhenotypic Enhancement | FSW = 0.1034
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0549
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0143
| Unknown | CYCLIN FAMILY PROTEIN |
AT4G16580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0146
| Unknown | CATALYTIC |
AT4G37990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0317
| Unknown | ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE |
AT5G09550 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0154
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
AT5G59140 | PredictedPhenotypic Enhancement | FSW = 0.0628
| Unknown | SKP1 FAMILY PROTEIN |
AT5G61770 | PredictedPhenotypic Enhancement | FSW = 0.0107
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G63670 | PredictedSynthetic Rescue | FSW = 0.0449
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT2G44100 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
AT1G72680 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G15475 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0486
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT1G19480 | PredictedPhenotypic Enhancement | FSW = 0.0571
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT1G54440 | Predictedsynthetic growth defect | FSW = 0.0360
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT5G67100 | PredictedSynthetic Lethality | FSW = 0.0139
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0079
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G10450 | PredictedSynthetic Lethality | FSW = 0.0127
| Unknown | SNL6 (SIN3-LIKE 6) |
AT5G08565 | PredictedSynthetic Rescue | FSW = 0.0660
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G49040 | PredictedGene fusion method | FSW = 0.0292
| Unknown | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) PROTEIN BINDING |
AT5G44510 | PredictedGene fusion method | FSW = 0.0563
| Unknown | TAO1 (TARGET OF AVRB OPERATION1) ATP BINDING / PROTEIN BINDING / TRANSMEMBRANE RECEPTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454