Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18760 - ( CHR8 (chromatin remodeling 8) ATP binding / DNA binding / helicase/ nucleic acid binding )

67 Proteins interacs with AT2G18760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G07950

Predicted

Phenotypic Enhancement

FSW = 0.0175

Class C:

nucleus

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT4G21010

Predicted

in vitro

FSW = 0.0360

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR-RELATED
AT1G75230

Predicted

Phenotypic Enhancement

FSW = 0.0228

Class C:

nucleus

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G16980

Predicted

Phenotypic Enhancement

FSW = 0.0554

Class C:

nucleus

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G35910

Predicted

synthetic growth defect

FSW = 0.0452

Class C:

nucleus

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT1G03190

Predicted

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.1069

Class C:

nucleus

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G05120

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0916

Class C:

nucleus

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G35670

Predicted

Phenotypic Suppression

FSW = 0.0207

Class C:

nucleus

FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT2G47620

Predicted

Phenotypic Enhancement

FSW = 0.0251

Class C:

nucleus

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0159

Class C:

nucleus

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0118

Class C:

nucleus

FZF TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.1215

Class C:

nucleus

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G06210

Predicted

Phenotypic Suppression

FSW = 0.0443

Class C:

nucleus

ELF8 (EARLY FLOWERING 8) BINDING
AT4G18040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0165

Class C:

nucleus

EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G78900

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0201

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G47520

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0068

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G05710

Predicted

Affinity Capture-MS

FSW = 0.0527

Unknown

ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE
AT1G54270

Predicted

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0340

Unknown

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT4G26970

Predicted

interaction prediction

FSW = 0.0264

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT4G35800

Predicted

in vitro

FSW = 0.0925

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G35830

Predicted

Affinity Capture-MS

FSW = 0.0590

Unknown

ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO)
AT3G03330

Predicted

Affinity Capture-MS

FSW = 0.0321

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G11890

Predicted

Synthetic Lethality

FSW = 0.0296

Unknown

SEC22 TRANSPORTER
AT3G18524

Predicted

Phenotypic Enhancement

FSW = 0.1451

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT1G57720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0234

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.0045

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G15870

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT5G02050

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0062

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT5G47770

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0300

Unknown

FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G53240

Predicted

Affinity Capture-MS

FSW = 0.0307

Unknown

MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL
AT3G28030

Predicted

Phenotypic Enhancement

FSW = 0.0670

Unknown

UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260

Predicted

Phenotypic Suppression

FSW = 0.0345

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G25980

Predicted

Synthetic Lethality

FSW = 0.0092

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G38470

Predicted

Phenotypic Enhancement

FSW = 0.0264

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT2G45790

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0181

Unknown

PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G20330

Predicted

in vitro

FSW = 0.0145

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT1G02120

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

VAD1 (VASCULAR ASSOCIATED DEATH1)
AT1G07705

Predicted

Phenotypic Enhancement

FSW = 0.0381

Unknown

TRANSCRIPTION REGULATOR
AT1G26830

Predicted

Phenotypic Enhancement

FSW = 0.0141

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G79730

Predicted

Phenotypic Suppression

FSW = 0.0611

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G06040

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1508

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT1G10930

Predicted

synthetic growth defect

Enriched domain pair

FSW = 0.0171

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G59890

Predicted

Synthetic Lethality

FSW = 0.0557

Unknown

SNL5 (SIN3-LIKE 5)
AT3G21060

Predicted

Synthetic Lethality

FSW = 0.0396

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G09620

Predicted

Co-purification

Phenotypic Enhancement

FSW = 0.1034

Unknown

OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.0549

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G48640

Predicted

Phenotypic Suppression

FSW = 0.0143

Unknown

CYCLIN FAMILY PROTEIN
AT4G16580

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0146

Unknown

CATALYTIC
AT4G37990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0317

Unknown

ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE
AT5G09550

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0154

Unknown

RAB GDP-DISSOCIATION INHIBITOR
AT5G59140

Predicted

Phenotypic Enhancement

FSW = 0.0628

Unknown

SKP1 FAMILY PROTEIN
AT5G61770

Predicted

Phenotypic Enhancement

FSW = 0.0107

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G63670

Predicted

Synthetic Rescue

FSW = 0.0449

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G29550

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT2G44100

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR
AT1G72680

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT4G36050

Predicted

Phenotypic Enhancement

FSW = 0.0108

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G15475

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0486

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT1G19480

Predicted

Phenotypic Enhancement

FSW = 0.0571

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT1G54440

Predicted

synthetic growth defect

FSW = 0.0360

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT5G67100

Predicted

Synthetic Lethality

FSW = 0.0139

Unknown

ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT1G07270

Predicted

Synthetic Lethality

FSW = 0.0079

Unknown

CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G10450

Predicted

Synthetic Lethality

FSW = 0.0127

Unknown

SNL6 (SIN3-LIKE 6)
AT5G08565

Predicted

Synthetic Rescue

FSW = 0.0660

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G49040

Predicted

Gene fusion method

FSW = 0.0292

Unknown

SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) PROTEIN BINDING
AT5G44510

Predicted

Gene fusion method

FSW = 0.0563

Unknown

TAO1 (TARGET OF AVRB OPERATION1) ATP BINDING / PROTEIN BINDING / TRANSMEMBRANE RECEPTOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454