Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07705 - ( transcription regulator )

30 Proteins interacs with AT1G07705
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G30470Predicted

Phenotypic Enhancement

FSW = 0.0831

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT2G06530

Predicted

two hybrid

FSW = 0.0992

Unknown

VPS21
AT4G34460

Predicted

Synthetic Rescue

FSW = 0.0237

Unknown

AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G73230

Predicted

two hybrid

FSW = 0.0951

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT3G18524

Predicted

Phenotypic Enhancement

FSW = 0.0254

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G26720

Predicted

Phenotypic Enhancement

FSW = 0.0079

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G13445

Predicted

Affinity Capture-Western

FSW = 0.0341

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G44530

Predicted

Phenotypic Enhancement

FSW = 0.0670

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G02680

Predicted

two hybrid

FSW = 0.0866

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G19610Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G18760

Predicted

Phenotypic Enhancement

FSW = 0.0381

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G55520

Predicted

Affinity Capture-Western

FSW = 0.0820

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT4G16420

Predicted

Affinity Capture-Western

FSW = 0.0339

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT2G22310

Predicted

Phenotypic Enhancement

FSW = 0.0353

Unknown

ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT1G02080Predicted

two hybrid

two hybrid

Synthetic Lethality

Phenotypic Suppression

co-fractionation

Co-fractionation

Affinity Capture-Western

two hybrid

two hybrid

Phenotypic Suppression

Synthetic Lethality

co-fractionation

Co-fractionation

Co-purification

FSW = 0.3352

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT5G18230

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.3836

Unknown

TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT1G32750

Predicted

Synthetic Lethality

FSW = 0.1524

Unknown

HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT2G06040

Predicted

Phenotypic Enhancement

FSW = 0.0392

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT3G20800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1620

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G58560

Predicted

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1998

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G10960

Predicted

Synthetic Lethality

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1360

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0336

Unknown

BINDING
AT5G48640

Predicted

Affinity Capture-Western

FSW = 0.1209

Unknown

CYCLIN FAMILY PROTEIN
AT5G63610

Predicted

two hybrid

FSW = 0.0713

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G45630

Predicted

interologs mapping

interologs mapping

Affinity Capture-Western

FSW = 0.2690

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G34050

Predicted

Affinity Capture-MS

FSW = 0.1021

Unknown

INVOLVED IN PROTEIN COMPLEX ASSEMBLY LOCATED IN MITOCHONDRION CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATP11 (INTERPROIPR010591) HAS 224 BLAST HITS TO 224 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 87 FUNGI - 80 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT1G15920

Predicted

two hybrid

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1492

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G48630

Predicted

Affinity Capture-Western

FSW = 0.0763

Unknown

CYCLIN FAMILY PROTEIN
AT3G07740

Predicted

Affinity Capture-Western

FSW = 0.0885

Unknown

ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT1G71790

Predicted

two hybrid

FSW = 0.0076

Unknown

F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454