Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G06530 - ( VPS21 )
22 Proteins interacs with AT2G06530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G02620 | Predictedinterologs mappingtwo hybridinteraction prediction | FSW = 0.0246
| Unknown | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT1G16920 | Predictedinteraction prediction | FSW = 0.0334
| Unknown | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT1G31220 | Predictedinteraction predictiontwo hybrid | FSW = 0.0914
| Unknown | PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE |
AT1G26160 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0140
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G19830 | PredictedAffinity Capture-Western | FSW = 0.2420
| Unknown | SNF72 |
AT1G06400 | Predictedtwo hybrid | FSW = 0.0227
| Unknown | ARA-2 GTP BINDING |
AT5G59710 | Predictedinteraction prediction | FSW = 0.0692
| Unknown | VIP2 (VIRE2 INTERACTING PROTEIN2) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT1G62800 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0308
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G19510 | Predictedinterologs mappingSynthetic Lethalitysynthetic growth defect | FSW = 0.0865
| Unknown | HAT31 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G10030 | Predictedtwo hybridinteraction prediction | FSW = 0.0492
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT5G22950 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybridPhylogenetic profile methodCo-expression | FSW = 0.3491
| Unknown | VPS241 |
AT1G07705 | Predictedtwo hybrid | FSW = 0.0992
| Unknown | TRANSCRIPTION REGULATOR |
AT1G25420 | PredictedPhenotypic Enhancement | FSW = 0.1116
| Unknown | UNKNOWN PROTEIN |
AT2G26000 | Predictedinterologs mappingCo-purification | FSW = 0.1185
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G27600 | Predictedfar western blottingCo-crystal StructureReconstituted Complex | FSW = 0.1619
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0825
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.0611
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G45000 | PredictedAffinity Capture-WesternAffinity Capture-WesternPhylogenetic profile methodCo-expression | FSW = 0.4129
| Unknown | VPS242 |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.0674
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G03950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1589
| Unknown | VPS23 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 23) |
AT5G44560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3571
| Unknown | VPS22 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454