Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G20330 - ( transcription initiation factor-related )
31 Proteins interacs with AT4G20330Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0584
| Unknown | UNKNOWN PROTEIN |
AT4G12610 | Predictedin vitroin vitroCo-purification | FSW = 0.2384
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G18500 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-ISOPROPYLMALATE SYNTHASE |
AT4G35800 | PredictedAffinity Capture-Westernfar western blottingReconstituted Complexinteraction prediction | FSW = 0.1072
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G64740 | Predictedtwo hybridbiochemicaltwo hybrid | FSW = 0.1939
| Unknown | CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.0327
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G03280 | Predictedtwo hybridtwo hybridin vitroin vitrotwo hybridAffinity Capture-MSAffinity Capture-Westerninterologs mappingin vitroReconstituted Complexsynthetic growth defectinteraction prediction | FSW = 0.2268
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT4G20340 | Predictedin vitroin vitroAffinity Capture-Western | FSW = 0.4675
| Unknown | RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G10670 | PredictedAffinity Capture-Western | FSW = 0.0811
| Unknown | GTC2 |
AT2G41630 | Predictedin vitroin vitroCo-expression | FSW = 0.1340
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G07470 | Predictedin vitroin vitro | FSW = 0.1524
| Unknown | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
AT1G55520 | Predictedin vitroin vitroCo-expression | FSW = 0.0800
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G18760 | Predictedin vitro | FSW = 0.0145
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G59230 | Predictedin vitroin vitro | FSW = 0.1502
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G55750 | Predictedin vitro | FSW = 0.0811
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G41360 | Predictedin vitro | FSW = 0.1353
| Unknown | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT1G75510 | Predictedin vitroin vitro | FSW = 0.1340
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT4G21710 | PredictedReconstituted Complexfar western blotting | FSW = 0.0719
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G45000 | Predictedin vitro | FSW = 0.0131
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G27620 | Predictedin vitro | FSW = 0.0258
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G61780 | Predictedin vivoin vitro | FSW = 0.0969
| Unknown | TUDOR DOMAIN-CONTAINING PROTEIN / NUCLEASE FAMILY PROTEIN |
AT2G19750 | PredictedAffinity Capture-Western | FSW = 0.0224
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30A) |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0303
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0256
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G62770 | PredictedSynthetic Lethality | FSW = 0.0138
| Unknown | ATATG18A |
AT5G14850 | PredictedPhenotypic Enhancement | FSW = 0.0235
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT3G22320 | PredictedAffinity Capture-Western | FSW = 0.0718
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G41010 | PredictedAffinity Capture-Western | FSW = 0.0947
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454