Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G27620 - ( CYCH1 (CYCLIN H1) cyclin-dependent protein kinase/ protein binding / protein kinase )
64 Proteins interacs with AT5G27620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assay | FSW = 0.0977
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G66750 | ExperimentalAffinity Capture-MStwo hybridprotein complementation assayaffinity technology | FSW = 0.4008
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G48820 | Experimentalprotein complementation assay | FSW = 0.2078
| Unknown | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G32710 | Experimentalprotein complementation assay | FSW = 0.2255
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G24810 | Experimentalprotein complementation assay | FSW = 0.2133
| Unknown | ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G23430 | Experimentalprotein complementation assay | FSW = 0.1592
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G18040 | Experimentaltwo hybridprotein complementation assay | FSW = 0.3128
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT3G19150 | Experimentalprotein complementation assay | FSW = 0.2200
| Unknown | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G50630 | Experimentalprotein complementation assay | FSW = 0.2123
| Unknown | KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING |
AT1G49620 | Experimentalprotein complementation assay | FSW = 0.2123
| Unknown | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G73690 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0948
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.2778
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.3245
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assay | FSW = 0.2206
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G63610 | Experimentalprotein complementation assay | FSW = 0.0779
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G28980 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.2940
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT1G67580 | Experimentalprotein complementation assay | FSW = 0.0780
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G27960 | Experimentalprotein complementation assay | FSW = 0.2471
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G27970 | Experimentalprotein complementation assay | FSW = 0.2395
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G37630 | Experimentaltwo hybrid | FSW = 0.4186
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G56310 | Predictedtwo hybridtwo hybrid | FSW = 0.0649
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT2G27290 | Predictedtwo hybrid | FSW = 0.0331
| Unknown | UNKNOWN PROTEIN |
AT3G55200 | Predictedtwo hybridtwo hybrid | FSW = 0.0383
| Unknown | SPLICING FACTOR PUTATIVE |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0021
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT1G75950 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0077
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT5G15680 | Predictedtwo hybridtwo hybrid | FSW = 0.0397
| Unknown | BINDING |
AT1G47250 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G22770 | Predictedin vivo | FSW = 0.0068
| Unknown | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G42790 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G41370 | Predictedin vivoin vitroCo-purificationAffinity Capture-MS | FSW = 0.1605
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT5G53180 | Predictedtwo hybrid | FSW = 0.0442
| Unknown | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G21010 | Predictedin vitro | FSW = 0.0376
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT3G55620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0022
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G61420 | Predictedin vitro | FSW = 0.0952
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G03190 | PredictedCo-purificationAffinity Capture-MSinteraction prediction | FSW = 0.0680
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G18340 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.1412
| Unknown | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT1G43190 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0331
| Unknown | POLYPYRIMIDINE TRACT-BINDING PROTEIN PUTATIVE / HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE |
AT4G02060 | Predictedin vivoAffinity Capture-MSCo-expression | FSW = 0.0348
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G05055 | PredictedAffinity Capture-MS | FSW = 0.1185
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G55750 | Predictedin vitroCo-purificationAffinity Capture-MS | FSW = 0.1116
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G41360 | Predictedin vivoin vitroAffinity Capture-MSCo-purification | FSW = 0.1667
| Unknown | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT3G03600 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0446
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G20850 | Predictedtwo hybridtwo hybrid | FSW = 0.0171
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G16590 | Predictedtwo hybrid | FSW = 0.0549
| Unknown | REV7 DNA BINDING |
AT2G44420 | Predictedtwo hybridtwo hybrid | FSW = 0.0133
| Unknown | PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN |
AT2G47970 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | NPL4 FAMILY PROTEIN |
AT3G55220 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G63000 | Predictedtwo hybridtwo hybrid | FSW = 0.0311
| Unknown | NPL41 (NPL4-LIKE PROTEIN 1) |
AT4G29020 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | GLYCINE-RICH PROTEIN |
AT5G47240 | Predictedtwo hybridtwo hybrid | FSW = 0.0716
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0877
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G48630 | Predictedtwo hybridtwo hybrid | FSW = 0.0524
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G61980 | Predictedtwo hybrid | FSW = 0.0386
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT4G30820 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0634
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT1G12400 | Predictedin vitroin vitro | FSW = 0.2424
| Unknown | DNA BINDING |
AT2G25970 | Predictedin vitro | FSW = 0.0662
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT4G10070 | Predictedin vitro | FSW = 0.0386
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT4G20330 | Predictedin vitro | FSW = 0.0258
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G15780 | Predictedtwo hybrid | FSW = 0.0474
| Unknown | UNKNOWN PROTEIN |
AT1G20610 | PredictedSynthetic Lethality | FSW = 0.0904
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G13010 | Predictedinteraction prediction | FSW = 0.0037
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454