Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G76540 - ( CDKB21 (cyclin-dependent kinase B21) cyclin-dependent protein kinase/ kinase/ protein binding )
35 Proteins interacs with AT1G76540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assay | FSW = 0.2570
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G32710 | Experimentaltwo hybrid | FSW = 0.6419
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT5G03415 | Experimentalprotein complementation assay | FSW = 0.1302
| Unknown | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT2G23430 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.6545
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G19150 | Experimentalprotein complementation assay | FSW = 0.5593
| Unknown | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G50630 | Experimentalprotein complementation assay | FSW = 0.5190
| Unknown | KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING |
AT4G34160 | Experimentalpull downReconstituted Complex | FSW = 0.3273
| Unknown | CYCD31 (CYCLIN D31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT1G49620 | Experimentalprotein complementation assay | FSW = 0.5190
| Unknown | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G27960 | ExperimentalAffinity Capture-MSprotein complementation assaytwo hybridaffinity technology | FSW = 0.4219
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT5G65420 | Experimentalinteraction detection methodpull downReconstituted Complextwo hybridprotein complementation assayin vitro | FSW = 0.5193
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G70210 | Experimentalpull downReconstituted Complex | FSW = 0.3000
| Unknown | CYCD11 (CYCLIN D11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G22490 | Experimentalpull downReconstituted Complexprotein complementation assay | FSW = 0.3344
| Unknown | CYCD21 (CYCLIN D21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT3G61190 | Experimental | FSW = 0.0702
| Unknown | BAP1 (BON ASSOCIATION PROTEIN 1) PHOSPHOLIPID BINDING / PROTEIN BINDING |
AT5G11300 | Experimentalpull downReconstituted Complexprotein complementation assay | FSW = 0.1440
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G17620 | Experimentalpull downReconstituted Complex | FSW = 0.0142
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G10440 | ExperimentalAffinity Capture-Westernprotein complementation assay | FSW = 0.4612
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.5413
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.7424
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G28980 | Experimentalprotein complementation assay | FSW = 0.5333
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT2G27970 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.2954
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G44110 | Experimentalprotein complementation assay | FSW = 0.2143
| Unknown | CYCA11 (CYCLIN A11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G25380 | Experimentalprotein complementation assay | FSW = 0.3106
| Unknown | CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G15570 | Experimentalprotein complementation assay | FSW = 0.2909
| Unknown | CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G80370 | Experimentalprotein complementation assay | FSW = 0.2483
| Unknown | CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G43080 | Experimentalprotein complementation assay | FSW = 0.3221
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.3409
| Unknown | CYCLIN PUTATIVE |
AT4G37490 | Experimentalprotein complementation assay | FSW = 0.1470
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06150 | Experimentalprotein complementation assay | FSW = 0.0690
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G16330 | Experimentalprotein complementation assay | FSW = 0.2182
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G37630 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.5217
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G03270 | Experimentalprotein complementation assay | FSW = 0.4900
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G27620 | Experimentalprotein complementation assay | FSW = 0.2206
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G67260 | Experimentaltwo hybrid | FSW = 0.2880
| Unknown | CYCD32 (CYCLIN D32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G66750 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5977
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G20930 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4847
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454