Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03415 - ( DPB protein binding / protein heterodimerization )
27 Proteins interacs with AT5G03415Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimentalinteraction detection method | FSW = 0.0203
| Class A:nucleusClass B:vacuoleplasma membraneperoxisomecytosolcytoskeleton | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48750 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.0879
| Class A:nucleusClass B:plasma membranecytosol | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G47870 | ExperimentalcoimmunoprecipitationAffinity Capture-WesternAffinity Capture-Westernprotein complementation assaytwo hybridcoimmunoprecipitation | FSW = 0.2353
| Class A:nucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | ATE2F2 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT2G36010 | Experimentaltwo hybridprotein complementation assaytwo hybrid | FSW = 0.0797
| Class A:nucleusClass D:plastid (p = 0.78) | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G22220 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.1939
| Class A:nucleusClass D:nucleus (p = 0.78) | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT2G40550 | Experimentaltwo hybrid | FSW = 0.1161
| Class B:plastidnucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | ETG1 (E2F TARGET GENE 1) |
AT2G30360 | Experimental | FSW = 0.0952
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
AT1G21410 | Experimentalpull downAffinity Capture-Western | FSW = 0.0889
| Unknown | SKP2A |
AT1G76540 | Experimentalprotein complementation assay | FSW = 0.1302
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G11300 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.1451
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G28980 | Experimentaltwo hybrid | FSW = 0.1283
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT2G27960 | Experimentaltwo hybrid | FSW = 0.0623
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT1G20610 | Experimentaltwo hybrid | FSW = 0.0223
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G16330 | Experimentaltwo hybrid | FSW = 0.1045
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G07698 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0430
| Class C:nucleus | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
AT4G34430 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G33610 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0556
| Class C:nucleus | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT5G19310 | PredictedPhenotypic EnhancementPhenotypic EnhancementCo-expression | FSW = 0.0309
| Class C:nucleus | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G13920 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0352
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT4G37260 | PredictedPhenotypic Suppression | FSW = 0.1452
| Class C:nucleus | MYB73 (MYB DOMAIN PROTEIN 73) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G09230 | PredictedPhenotypic Suppression | FSW = 0.1290
| Class C:nucleus | ATMYB1 (MYB DOMAIN PROTEIN 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G12280 | PredictedPhenotypic EnhancementPhenotypic SuppressionPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0356
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G26870 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0296
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT5G67320 | PredictedPhenotypic EnhancementPhenotypic EnhancementCo-expression | FSW = 0.0159
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT1G59580 | PredictedPhenotypic Enhancement | FSW = 0.0128
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0072
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT5G63770 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | ATDGK2 (DIACYLGLYCEROL KINASE 2) DIACYLGLYCEROL KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454