Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G49620 - ( ICK5 cyclin binding / cyclin-dependent protein kinase inhibitor )

18 Proteins interacs with AT1G49620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48750

Experimental

protein complementation assay

two hybrid

FSW = 0.1338

Class A:

nucleus

Class B:

plasma membrane

cytosol

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT4G28980

Experimental

protein complementation assay

FSW = 0.5795

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1)
AT1G66750

Experimental

protein complementation assay

FSW = 0.5090

Class A:

nucleus

Class B:

cytosol

CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT1G18040

Experimental

protein complementation assay

FSW = 0.2294

Class A:

nucleus

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT3G54650

Experimental

interaction detection method

FSW = 0.0462

Unknown

FBL17 UBIQUITIN-PROTEIN LIGASE
AT5G65420

Experimental

protein complementation assay

FSW = 0.5022

Unknown

CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G22010Experimental

Reconstituted Complex

in vitro

FSW = 0.0847

Unknown

RKP (RELATED TO KPC1) PROTEIN BINDING / ZINC ION BINDING
AT3G54180

Experimental

protein complementation assay

FSW = 0.3490

Unknown

CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT2G38620

Experimental

protein complementation assay

FSW = 0.4994

Unknown

CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G76540

Experimental

protein complementation assay

FSW = 0.5190

Unknown

CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT2G27970

Experimental

protein complementation assay

FSW = 0.2497

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G70210

Experimental

protein complementation assay

two hybrid

FSW = 0.2083

Unknown

CYCD11 (CYCLIN D11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G50070

Experimental

protein complementation assay

FSW = 0.1855

Unknown

CYCD33 (CYCLIN D33) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G10440

Experimental

protein complementation assay

two hybrid

FSW = 0.3990

Unknown

CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE
AT4G37630

Experimental

protein complementation assay

FSW = 0.4137

Unknown

CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE
AT4G03270

Experimental

protein complementation assay

two hybrid

FSW = 0.4926

Unknown

CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G27620

Experimental

protein complementation assay

FSW = 0.2123

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G20930

Experimental

two hybrid

FSW = 0.3630

Unknown

CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454