Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27970 - ( CKS2 (CDK-subunit 2) cyclin-dependent protein kinase/ cyclin-dependent protein kinase regulator )
90 Proteins interacs with AT2G27970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | ExperimentalAffinity Capture-MSprotein complementation assaytwo hybridaffinity technology | FSW = 0.1930
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G28980 | Experimentalprotein complementation assay | FSW = 0.3067
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT1G66750 | Experimentalprotein complementation assay | FSW = 0.3094
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G48160 | Experimentalprotein complementation assay | FSW = 0.1333
| Unknown | DEL1 (DP-E2F-LIKE 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G48820 | Experimentalprotein complementation assay | FSW = 0.2611
| Unknown | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G32710 | Experimentalprotein complementation assay | FSW = 0.2679
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G24810 | Experimentalprotein complementation assay | FSW = 0.2575
| Unknown | ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G23430 | Experimentalfluorescence acceptor donor pairprotein complementation assay | FSW = 0.2735
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G18040 | Experimentalprotein complementation assay | FSW = 0.1750
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT3G19150 | Experimentalprotein complementation assay | FSW = 0.2745
| Unknown | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G50630 | Experimentalprotein complementation assay | FSW = 0.2497
| Unknown | KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING |
AT4G34160 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.1722
| Unknown | CYCD31 (CYCLIN D31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT1G49620 | Experimentalprotein complementation assay | FSW = 0.2497
| Unknown | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G73690 | Experimentalprotein complementation assay | FSW = 0.1364
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G54180 | ExperimentalAffinity Capture-MSprotein complementation assaytwo hybridaffinity technology | FSW = 0.2559
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.3231
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.2954
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.1807
| Unknown | CYCLIN PUTATIVE |
AT2G22490 | Experimentalprotein complementation assay | FSW = 0.1997
| Unknown | CYCD21 (CYCLIN D21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT5G65420 | Experimentalprotein complementation assay | FSW = 0.3424
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G10440 | Experimentalprotein complementation assay | FSW = 0.2893
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G37630 | Experimentalprotein complementation assay | FSW = 0.3214
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G03270 | Experimentalprotein complementation assay | FSW = 0.3303
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G27620 | Experimentalprotein complementation assay | FSW = 0.2395
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G13840 | Experimentalprotein complementation assay | FSW = 0.0476
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT1G20930 | Experimentaltwo hybrid | FSW = 0.1585
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.0455
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G39740 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0330
| Unknown | SEC22 TRANSPORTER |
AT1G75990 | PredictedReconstituted Complexsynthetic growth defect | FSW = 0.0180
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G53750 | PredictedReconstituted Complex | FSW = 0.0465
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT4G26110 | PredictedPhenotypic Enhancement | FSW = 0.0092
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT3G51840 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | ACX4 (ACYL-COA OXIDASE 4) ACYL-COA OXIDASE/ OXIDOREDUCTASE |
AT4G26720 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.0830
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0424
| Unknown | REPLICATION PROTEIN-RELATED |
AT5G53180 | Predictedtwo hybrid | FSW = 0.0473
| Unknown | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0428
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0451
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G57150 | Predictedtwo hybrid | FSW = 0.0043
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT3G13940 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G59900 | PredictedPhenotypic Enhancement | FSW = 0.0500
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0450
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G47720 | Predictedtwo hybrid | FSW = 0.0056
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT2G31200 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT5G59240 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT5G03730 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.0589
| Unknown | SOH1 FAMILY PROTEIN |
AT5G20850 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.0500
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G01910 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT2G04660 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G16090 | Predictedtwo hybrid | FSW = 0.0235
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G58570 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT5G26640 | Predictedtwo hybrid | FSW = 0.0233
| Unknown | UNKNOWN PROTEIN |
AT5G28350 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF1339 (INTERPROIPR009771) WD40 REPEAT (INTERPROIPR001680) WD40/YVTN REPEAT-LIKE (INTERPROIPR015943) QUINOPROTEIN AMINE DEHYDROGENASE BETA CHAIN-LIKE (INTERPROIPR011044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G614801) HAS 271 BLAST HITS TO 226 PROTEINS IN 106 SPECIES ARCHAE - 0 BACTERIA - 9 METAZOA - 133 FUNGI - 64 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 35 (SOURCE NCBI BLINK) |
AT5G36160 | Predictedtwo hybrid | FSW = 0.0096
| Unknown | AMINOTRANSFERASE-RELATED |
AT5G38840 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0582
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G48630 | Predictedtwo hybrid | FSW = 0.0488
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G20610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mappinginteraction prediction | FSW = 0.1775
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G65970 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE |
AT1G77720 | Predictedinterologs mapping | FSW = 0.1010
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G78770 | PredictedAffinity Capture-Western | FSW = 0.0340
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G20000 | PredictedAffinity Capture-Western | FSW = 0.0791
| Unknown | HBT (HOBBIT) BINDING |
AT1G07270 | PredictedAffinity Capture-Western | FSW = 0.0463
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G08780 | PredictedPhenotypic Enhancement | FSW = 0.0574
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G10580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0135
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G29990 | PredictedPhenotypic Enhancement | FSW = 0.0385
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G34150 | PredictedPhenotypic Enhancement | FSW = 0.0917
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0619
| Unknown | F-BOX FAMILY PROTEIN |
AT2G28390 | PredictedPhenotypic Enhancement | FSW = 0.0198
| Unknown | SAND FAMILY PROTEIN |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.0451
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic Enhancement | FSW = 0.0657
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G42660 | PredictedPhenotypic Enhancement | FSW = 0.0984
| Unknown | NUCLEOTIDE BINDING |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0083
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G15770 | PredictedSynthetic Lethality | FSW = 0.0177
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G22350 | PredictedSynthetic Rescue | FSW = 0.0108
| Unknown | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN |
AT4G38630 | PredictedPhenotypic Enhancement | FSW = 0.0437
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0480
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.0501
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.0278
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT3G46940 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0174
| Unknown | DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY |
AT3G48150 | PredictedAffinity Capture-Western | FSW = 0.0600
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT5G15870 | Predictedinteraction prediction | FSW = 0.0226
| Unknown | GLYCOSYL HYDROLASE FAMILY 81 PROTEIN |
AT2G27960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4946
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454