Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G46940 - ( deoxyuridine 5-triphosphate nucleotidohydrolase family )
18 Proteins interacs with AT3G46940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G54440 | Predictedpull down | FSW = 0.0655
| Unknown | GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN |
AT5G15450 | Predictedpull down | FSW = 0.0183
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G12110 | Predictedtwo hybrid | FSW = 0.0058
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G76850 | Predictedtwo hybridtwo hybrid | FSW = 0.0423
| Unknown | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | SGP2 GTP BINDING |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0149
| Unknown | SGP1 GTP BINDING |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0059
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT5G41150 | Predictedinterologs mapping | FSW = 0.0508
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT1G04200 | Predictedtwo hybrid | FSW = 0.0544
| Unknown | UNKNOWN PROTEIN |
AT1G21170 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | SEC5B |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0136
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT2G43760 | Predictedpull down | FSW = 0.0952
| Unknown | MOLYBDOPTERIN BIOSYNTHESIS MOAE FAMILY PROTEIN |
AT1G67500 | Predictedsynthetic growth defect | FSW = 0.0303
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G18630 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1113
| Unknown | URACIL DNA GLYCOSYLASE FAMILY PROTEIN |
AT2G27970 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0174
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G27740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0123
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G36050 | Predictedinterologs mapping | FSW = 0.0502
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT2G27960 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454