Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07270 - ( cell division control protein CDC6b putative (CDC6b) )
60 Proteins interacs with AT1G07270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G27490 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | ATCOAE ATP BINDING / DEPHOSPHO-COA KINASE |
AT2G34480 | PredictedSynthetic Lethality | FSW = 0.0027
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT3G02520 | Predictedsynthetic growth defect | FSW = 0.0236
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G22450 | Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE |
AT3G58510 | PredictedSynthetic Rescue | FSW = 0.0137
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT1G35160 | Predictedsynthetic growth defect | FSW = 0.0193
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48750 | PredictedReconstituted ComplexReconstituted ComplexbiochemicalbiochemicalAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernbiochemicalbiochemicalinterologs mappinginteraction prediction | FSW = 0.1325
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G38290 | Predictedinterologs mapping | FSW = 0.0313
| Unknown | ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER |
AT1G20760 | PredictedSynthetic Lethality | FSW = 0.0035
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0294
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G25880 | PredictedPhenotypic Suppression | FSW = 0.0340
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT2G45490 | PredictedPhenotypic Enhancement | FSW = 0.0189
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G09570 | Predictedin vitroin vivo | FSW = 0.0036
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT1G47210 | Predictedin vivoin vivoCo-expression | FSW = 0.0313
| Unknown | CYCLIN FAMILY PROTEIN |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.0988
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT1G44900 | Predictedtwo hybridReconstituted Complexsynthetic growth defectinteraction prediction | FSW = 0.1360
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT1G19120 | PredictedSynthetic Lethality | FSW = 0.0473
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G10710 | Predictedinteraction prediction | FSW = 0.0276
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G02060 | PredictedReconstituted Complexin vivoin vivoColocalizationColocalizationColocalizationtwo hybridAffinity Capture-WesternCo-expression | FSW = 0.1644
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G29570 | Predictedtwo hybridCo-expression | FSW = 0.0365
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT3G22830 | PredictedAffinity Capture-MS | FSW = 0.0547
| Unknown | AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT2G18760 | PredictedSynthetic Lethality | FSW = 0.0079
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31970 | PredictedSynthetic Lethality | FSW = 0.0509
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G66130 | Predictedinterologs mapping | FSW = 0.0679
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT1G62430 | PredictedSynthetic Lethality | FSW = 0.0169
| Unknown | ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
AT5G40820 | PredictedSynthetic Lethality | FSW = 0.0714
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT2G37560 | Predictedtwo hybridsynthetic growth defectReconstituted ComplexAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westernin vitrointeraction predictionCo-expression | FSW = 0.1930
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G54260 | PredictedSynthetic Lethality | FSW = 0.0823
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G12620 | Predictedin vivoin vivoin vitroin vitroAffinity Capture-Westerntwo hybridAffinity Capture-WesternPhenotypic SuppressionReconstituted Complex | FSW = 0.0712
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G46280 | Predictedin vivoin vivoin vitroin vitroCo-expression | FSW = 0.0629
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT1G04730 | PredictedSynthetic Lethality | FSW = 0.1094
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G79890 | Predictedsynthetic growth defect | FSW = 0.1105
| Unknown | HELICASE-RELATED |
AT2G07690 | PredictedColocalizationColocalization | FSW = 0.0742
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT4G11920 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.1324
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT1G17720 | PredictedAffinity Capture-Western | FSW = 0.0189
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G23260 | PredictedSynthetic Lethality | FSW = 0.0234
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G27970 | PredictedAffinity Capture-Western | FSW = 0.0463
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G02820 | PredictedSynthetic RescueCo-expression | FSW = 0.1005
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G26020 | PredictedSynthetic Lethality | FSW = 0.0651
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT3G42660 | PredictedSynthetic Lethalitysynthetic growth defectCo-expression | FSW = 0.1345
| Unknown | NUCLEOTIDE BINDING |
AT3G48150 | Predictedsynthetic growth defect | FSW = 0.0554
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.0530
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G25120 | PredictedSynthetic Lethality | FSW = 0.0834
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.0652
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT5G13680 | Predictedsynthetic growth defect | FSW = 0.0092
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT1G20610 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0515
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G29910 | PredictedReconstituted Complex | FSW = 0.0896
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G16690 | PredictedReconstituted Complex | FSW = 0.0837
| Unknown | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3) PROTEIN BINDING |
AT5G48600 | Predictedinterologs mapping | FSW = 0.0722
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT5G62410 | Predictedinterologs mapping | FSW = 0.0547
| Unknown | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) TRANSPORTER |
AT4G19110 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0281
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G27960 | PredictedAffinity Capture-Western | FSW = 0.0316
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT3G19420 | Predictedinterologs mappingPhenotypic Enhancementsynthetic growth defect | FSW = 0.0344
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT1G53570 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0394
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03960 | Predictedin vitroin vivotwo hybridCo-expression | FSW = 0.0150
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G13460 | PredictedSynthetic Lethality | FSW = 0.0961
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G64750 | PredictedSynthetic Lethality | FSW = 0.0173
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT1G69670 | Predictedinteraction prediction | FSW = 0.0141
| Unknown | CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G29680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0651
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454