Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G47210 - ( cyclin family protein )

14 Proteins interacs with AT1G47210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48750

Experimental

protein complementation assay

FSW = 0.0582

Class A:

nucleus

cytosol

Class B:

plasma membrane

Class D:

cytosol (p = 0.67)

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT2G23430

Experimental

protein complementation assay

FSW = 0.1471

Class A:

nucleus

Class B:

cytosol

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT1G73690

Experimental

protein complementation assay

FSW = 0.1471

Class A:

nucleus

Class B:

cytosol

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G32710

Experimental

protein complementation assay

FSW = 0.2408

Class A:

nucleus

Class B:

cytosol

Class D:

mitochondrion (p = 0.82)

KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT1G18040

Experimental

protein complementation assay

FSW = 0.0914

Class A:

nucleus

Class B:

cytosol

Class D:

mitochondrion (p = 0.82)

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT3G12720

Predicted

in vivo

FSW = 0.1233

Class C:

nucleus

ATMYB67 (MYB DOMAIN PROTEIN 67) DNA BINDING / TRANSCRIPTION FACTOR
AT4G23800

Predicted

in vitro

in vivo

Co-expression

FSW = 0.1345

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G12280

Predicted

in vivo

in vivo

in vitro

in vitro

in vitro

in vivo

Co-expression

FSW = 0.0235

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G42190

Predicted

in vivo

FSW = 0.0109

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G07270

Predicted

in vivo

in vivo

Co-expression

FSW = 0.0313

Unknown

CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT4G33260

Predicted

in vivo

two hybrid

FSW = 0.0362

Unknown

CDC202 SIGNAL TRANSDUCER
AT1G47230

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2284

Unknown

CYCLIN PUTATIVE
AT1G47220

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1882

Unknown

CYCA33 (CYCLIN A33) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G12610

Predicted

Gene fusion method

FSW = 0.0672

Unknown

DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) NUCLEOTIDE BINDING / PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454