Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G05190 - ( ATK5 (ARABIDOPSIS THALIANA KINESIN 5) microtubule motor )
46 Proteins interacs with AT4G05190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G35160 | PredictedSynthetic Lethality | FSW = 0.1231
| Class C:nucleuscytoskeleton | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G61000 | Predictedtwo hybrid | FSW = 0.0823
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT3G48750 | Predictedbiochemical | FSW = 0.0249
| Class C:nucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G61650 | PredictedReconstituted ComplexEnriched domain pair | FSW = 0.1346
| Class C:cytoskeleton | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT1G14690 | PredictedSynthetic Lethality | FSW = 0.3570
| Class C:cytoskeleton | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.3550
| Class C:cytoskeleton | ATEB1A MICROTUBULE BINDING |
AT2G35630 | PredictedSynthetic Lethality | FSW = 0.1396
| Class C:cytoskeleton | MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING |
AT1G20010 | PredictedReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.1785
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.1005
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G22110 | PredictedSynthetic Lethality | FSW = 0.0496
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G80070 | Predictedtwo hybridCo-expression | FSW = 0.0077
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G54670 | Predictedtwo hybridCo-expression | FSW = 0.0261
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G10130 | PredictedSynthetic Lethality | FSW = 0.0475
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT4G21270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1029
| Unknown | ATK1 (ARABIDOPSIS THALIANA KINESIN 1) MICROTUBULE MOTOR/ MINUS-END-DIRECTED MICROTUBULE MOTOR |
AT3G25980 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.1810
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G36200 | PredictedSynthetic RescueSynthetic RescueSynthetic LethalitySynthetic Rescue | FSW = 0.4401
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G08830 | PredictedSynthetic Lethality | FSW = 0.1258
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT4G38630 | Predictedsynthetic growth defectSynthetic LethalityCo-expression | FSW = 0.0986
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT2G44580 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2825
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G04730 | Predictedsynthetic growth defectCo-expression | FSW = 0.2278
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G49510 | PredictedSynthetic LethalityCo-expression | FSW = 0.2170
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | PredictedSynthetic LethalityCo-expression | FSW = 0.2448
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G16270 | PredictedSynthetic Lethality | FSW = 0.2989
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT5G67320 | PredictedSynthetic Lethality | FSW = 0.0597
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT1G64750 | PredictedSynthetic LethalityCo-expression | FSW = 0.0605
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT3G22480 | PredictedSynthetic LethalityCo-expression | FSW = 0.2154
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G51710 | PredictedSynthetic Lethality | FSW = 0.0557
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT5G13780 | PredictedSynthetic Lethality | FSW = 0.0936
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT2G33560 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1571
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G66740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0680
| Unknown | SGA2 |
AT1G29990 | PredictedSynthetic LethalityCo-expression | FSW = 0.1918
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G15790 | PredictedSynthetic Lethality | FSW = 0.0138
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G02820 | PredictedSynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.2337
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G08780 | PredictedSynthetic LethalityCo-expression | FSW = 0.2198
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G79890 | PredictedSynthetic Lethality | FSW = 0.3379
| Unknown | HELICASE-RELATED |
AT4G08960 | PredictedSynthetic Lethality | FSW = 0.0641
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT3G25100 | PredictedSynthetic LethalityCo-expression | FSW = 0.0927
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT1G34150 | PredictedSynthetic Lethality | FSW = 0.0648
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.0564
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G42660 | PredictedSynthetic LethalityCo-expression | FSW = 0.2504
| Unknown | NUCLEOTIDE BINDING |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.0826
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.1270
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0988
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT2G28620 | PredictedSynthetic RescueSynthetic RescueCo-expression | FSW = 0.1000
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G54670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5974
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT1G25360 | PredictedGene fusion method | FSW = 0.0211
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454