Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G47250 - ( PAF2 endopeptidase/ peptidase/ threonine-type endopeptidase )
33 Proteins interacs with AT1G47250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3084
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5045
| Class C:plasma membrane | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G20620 | Predictedtwo hybrid | FSW = 0.0185
| Class C:plasma membrane | CAT3 (CATALASE 3) CATALASE |
AT3G60820 | PredictedAffinity Capture-MS | FSW = 0.4950
| Class C:plasma membrane | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.1970
| Class C:plasma membrane | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G42790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6403
| Class C:plasma membrane | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5159
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G66140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4640
| Unknown | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | Predictedtwo hybridtwo hybridAffinity Capture-MSin vitroAffinity Capture-MStwo hybridPhylogenetic profile methodCo-expression | FSW = 0.5238
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.1557
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | Predictedtwo hybridPhylogenetic profile method | FSW = 0.5022
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MS | FSW = 0.4531
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G11170 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G13060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4007
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5380
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2970
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.4432
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G64520 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSCo-expression | FSW = 0.1473
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G79210 | Predictedin vivoin vitroGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2934
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2147
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G27620 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G44635 | Predictedtwo hybrid | FSW = 0.0442
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G27430 | PredictedAffinity Capture-MSCo-expression | FSW = 0.5248
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G56450 | PredictedAffinity Capture-MS | FSW = 0.4618
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G11475 | PredictedAffinity Capture-MSGene neighbors method | FSW = 0.0131
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0349
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2268
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1128
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1764
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0722
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT3G59970 | Predictedtwo hybrid | FSW = 0.0901
| Unknown | MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1) METHYLENETETRAHYDROFOLATE REDUCTASE (NADPH) |
AT5G12410 | Predictedtwo hybridCo-expression | FSW = 0.1088
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT1G72340 | Predictedtwo hybrid | FSW = 0.0276
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454