Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16470 - ( PAB1 (PROTEASOME SUBUNIT PAB1) endopeptidase/ peptidase/ threonine-type endopeptidase )
45 Proteins interacs with AT1G16470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G21720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vivoGene neighbors methodCo-expression | FSW = 0.4316
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G66140 | Predictedtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.4858
| Unknown | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vivoPhylogenetic profile methodCo-expression | FSW = 0.4754
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G12580 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G22630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3260
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MSAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5287
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5365
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G04910 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G01690 | Predictedtwo hybrid | FSW = 0.0197
| Unknown | BINDING |
AT5G35590 | Predictedin vivoin vitroPhylogenetic profile method | FSW = 0.4388
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridPhylogenetic profile methodCo-expression | FSW = 0.1677
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | Predictedin vivoin vitro | FSW = 0.2647
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MSin vivoin vitroAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4826
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G63310 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT3G60820 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4331
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G18080 | Predictedtwo hybrid | FSW = 0.0297
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT1G48090 | PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | PHOSPHOINOSITIDE BINDING |
AT1G45000 | Predictedtwo hybridGene neighbors methodCo-expression | FSW = 0.1874
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT5G42790 | Predictedtwo hybridin vivoin vitroPhylogenetic profile methodCo-expression | FSW = 0.5121
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G47250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5380
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.1967
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G53750 | PredictedAffinity Capture-Western | FSW = 0.1392
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0076
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.2235
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT4G18800 | Predictedinterologs mapping | FSW = 0.0057
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT1G09100 | PredictedAffinity Capture-Western | FSW = 0.1733
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | Predictedtwo hybridCo-expression | FSW = 0.1910
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G18130 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT1G14980 | Predictedtwo hybridGene neighbors methodCo-expression | FSW = 0.0640
| Unknown | CPN10 (CHAPERONIN 10) CHAPERONE BINDING |
AT1G77440 | Predictedin vivoin vitroGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2747
| Unknown | PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.3650
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G13060 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationtwo hybrid | FSW = 0.4259
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2898
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G26340 | Predictedin vivoin vitrotwo hybrid | FSW = 0.1319
| Unknown | 20S PROTEASOME BETA SUBUNIT E PUTATIVE |
AT5G43010 | Predictedtwo hybrid | FSW = 0.2108
| Unknown | RPT4A ATPASE |
AT5G12410 | Predictedtwo hybridCo-expression | FSW = 0.0847
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT1G56450 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4316
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G40580 | Predictedin vivoin vitroCo-expression | FSW = 0.4369
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G27430 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridCo-expression | FSW = 0.4959
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0453
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.1357
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G64520 | PredictedAffinity Capture-Western | FSW = 0.1719
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G10350 | Predictedinterologs mapping | FSW = 0.0141
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G79210 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4647
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454