Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12410 - ( THUMP domain-containing protein )
47 Proteins interacs with AT5G12410| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G66140
   | Predictedtwo hybridCo-expression | FSW = 0.1425
| Unknown | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G62290
| Predictedtwo hybrid | FSW = 0.0160
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
| AT2G27020
| Predictedtwo hybrid | FSW = 0.1072
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G20020
| Predictedtwo hybrid | FSW = 0.0178
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G60820
| Predictedtwo hybridCo-expression | FSW = 0.0762
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G53480
| PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT1G47250
| Predictedtwo hybridCo-expression | FSW = 0.1088
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G42790
| Predictedtwo hybrid | FSW = 0.0775
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G04290
| Predictedtwo hybrid | FSW = 0.0267
| Unknown | THIOESTERASE FAMILY PROTEIN |
| AT3G61200
| Predictedtwo hybrid | FSW = 0.0320
| Unknown | THIOESTERASE FAMILY PROTEIN |
| AT3G04820
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0294
| Unknown | PSEUDOURIDINE SYNTHASE |
| AT3G15290
| Predictedtwo hybrid | FSW = 0.0533
| Unknown | 3-HYDROXYBUTYRYL-COA DEHYDROGENASE PUTATIVE |
| AT4G32830
| Predictedtwo hybrid | FSW = 0.0282
| Unknown | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G50670
| Predictedtwo hybridCo-expression | FSW = 0.0141
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G24880
| Predictedtwo hybridCo-expression | FSW = 0.0413
| Unknown | UNKNOWN PROTEIN |
| AT3G06720
| PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
| AT2G36170 | Predictedtwo hybridCo-expression | FSW = 0.0124
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
| AT5G62500
| Predictedtwo hybrid | FSW = 0.0513
| Unknown | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
| AT2G02380
| Predictedtwo hybrid | FSW = 0.0784
| Unknown | ATGSTZ2 CATALYTIC/ GLUTATHIONE TRANSFERASE |
| AT1G16470
| Predictedtwo hybridCo-expression | FSW = 0.0847
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G02390
| Predictedtwo hybrid | FSW = 0.0706
| Unknown | ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1) CATALYTIC/ GLUTATHIONE TRANSFERASE |
| AT3G25980
| Predictedtwo hybrid | FSW = 0.0048
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
| AT3G14290
| Predictedtwo hybridCo-expression | FSW = 0.1137
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G03110
| Predictedtwo hybrid | FSW = 0.0642
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G27530
| Predictedtwo hybrid | FSW = 0.0457
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UBIQUITIN-CONJUGATING ENZYME/RWD-LIKE (INTERPROIPR016135) UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 (INTERPROIPR014806) HAS 183 BLAST HITS TO 183 PROTEINS IN 80 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 126 FUNGI - 0 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 36 (SOURCE NCBI BLINK) |
| AT2G14045
| Predictedtwo hybrid | FSW = 0.0168
| Unknown | UNKNOWN PROTEIN |
| AT2G34260
| Predictedtwo hybrid | FSW = 0.0533
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G52590 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G59600
| Predictedtwo hybrid | FSW = 0.0588
| Unknown | NRPB8B DNA-DIRECTED RNA POLYMERASE |
| AT4G00090
| Predictedtwo hybridCo-expression | FSW = 0.0186
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G00560
| Predictedtwo hybrid | FSW = 0.0320
| Unknown | METHIONINE ADENOSYLTRANSFERASE REGULATORY BETA SUBUNIT-RELATED |
| AT4G11330
| Predictedtwo hybrid | FSW = 0.0124
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT4G25550
| Predictedtwo hybridCo-expression | FSW = 0.0282
| Unknown | PROTEIN BINDING |
| AT4G31240
| Predictedtwo hybrid | FSW = 0.0457
| Unknown | INVOLVED IN CELL REDOX HOMEOSTASIS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN-LIKE (INTERPROIPR017936) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) C1-LIKE (INTERPROIPR011424) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DC1 DOMAIN-CONTAINING PROTEIN (TAIRAT1G604201) HAS 1190 BLAST HITS TO 724 PROTEINS IN 157 SPECIES ARCHAE - 0 BACTERIA - 225 METAZOA - 381 FUNGI - 0 PLANTS - 174 VIRUSES - 0 OTHER EUKARYOTES - 410 (SOURCE NCBI BLINK) |
| AT4G32810
| Predictedtwo hybrid | FSW = 0.0800
| Unknown | CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) OXIDOREDUCTASE ACTING ON SINGLE DONORS WITH INCORPORATION OF MOLECULAR OXYGEN INCORPORATION OF TWO ATOMS OF OXYGEN |
| AT4G36690
| Predictedtwo hybrid | FSW = 0.0119
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G14670
| Predictedtwo hybrid | FSW = 0.0160
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
| AT5G15770
| Predictedtwo hybrid | FSW = 0.0484
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
| AT5G40040
| Predictedtwo hybrid | FSW = 0.0211
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E) |
| AT5G54750
| Predictedtwo hybridCo-expression | FSW = 0.0074
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
| AT5G56580
| Predictedtwo hybrid | FSW = 0.0308
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
| AT1G20370
| PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT1G02690
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0217
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT5G55190
| Predictedtwo hybridCo-expression | FSW = 0.0314
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT4G35450
| Predictedtwo hybrid | FSW = 0.0089
| Unknown | AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING |
| AT3G44590
| Predictedtwo hybridCo-expression | FSW = 0.0107
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
| AT1G54250
| Predictedtwo hybrid | FSW = 0.0293
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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