Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60820 - ( PBF1 peptidase/ threonine-type endopeptidase )
51 Proteins interacs with AT3G60820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.2132
| Class D:plastid (p = 0.78)nucleus (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.4388
| Class C:plastid | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.0043
| Class C:plastid | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G22630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2323
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G28715 | Predictedtwo hybrid | FSW = 0.0143
| Class C:plasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G53850 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5411
| Class C:plasma membrane | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G28710 | Predictedtwo hybrid | FSW = 0.0138
| Class C:plasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT5G47510 | PredictedAffinity Capture-MS | FSW = 0.0177
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G49460 | Predictedtwo hybrid | FSW = 0.0399
| Class C:plasma membrane | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) ATP CITRATE SYNTHASE |
AT3G06650 | Predictedtwo hybrid | FSW = 0.0935
| Class C:plasma membrane | ACLB-1 ATP CITRATE SYNTHASE |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2317
| Class C:plasma membrane | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G47250 | PredictedAffinity Capture-MS | FSW = 0.4950
| Class C:plasma membrane | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.1791
| Class C:plasma membrane | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.1024
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4732
| Class C:plasma membrane | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G21720 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.4478
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5199
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0102
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1546
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4551
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2154
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4970
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0050
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G16470 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4331
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G77440 | PredictedPhylogenetic profile method | FSW = 0.2845
| Unknown | PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MS | FSW = 0.3571
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G13060 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4153
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3390
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G72340 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G59970 | Predictedtwo hybrid | FSW = 0.0952
| Unknown | MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1) METHYLENETETRAHYDROFOLATE REDUCTASE (NADPH) |
AT5G39930 | Predictedtwo hybrid | FSW = 0.0413
| Unknown | CLPS5 (CLP1-SIMILAR PROTEIN 5) |
AT5G12410 | Predictedtwo hybridCo-expression | FSW = 0.0762
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT5G10790 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0119
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G40580 | PredictedPhenotypic EnhancementAffinity Capture-MSPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MSCo-expression | FSW = 0.4306
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSin vivoin vitroAffinity Capture-MS | FSW = 0.3063
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT4G27490 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT5G13570 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
AT1G56450 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4737
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G13330 | PredictedAffinity Capture-MS | FSW = 0.2510
| Unknown | BINDING |
AT1G68200 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT3G21460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0176
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0838
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1485
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G39400 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0501
| Unknown | PTEN1 PHOSPHATASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0032
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G57950 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G27430 | PredictedAffinity Capture-MSCo-expression | FSW = 0.4183
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G04680 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
AT5G02760 | Predictedinteraction prediction | FSW = 0.0200
| Unknown | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN |
AT4G00720 | Predictedinteraction prediction | FSW = 0.0123
| Unknown | ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G01230 | Predictedinteraction prediction | FSW = 0.0198
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454