Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59140 - ( SKP1 family protein )
24 Proteins interacs with AT5G59140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0355
| Unknown | BINDING |
AT3G12110 | PredictedPhenotypic Enhancement | FSW = 0.0097
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G44790 | Predictedtwo hybridtwo hybrid | FSW = 0.0989
| Unknown | CHAC-LIKE FAMILY PROTEIN |
AT5G26220 | Predictedtwo hybrid | FSW = 0.1071
| Unknown | CHAC-LIKE FAMILY PROTEIN |
AT1G05120 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0893
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT4G20400 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.0628
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G25490 | Predictedinteraction prediction | FSW = 0.0252
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G15930 | Predictedtwo hybridtwo hybrid | FSW = 0.0171
| Unknown | MICROTUBULE MOTOR |
AT5G63770 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | ATDGK2 (DIACYLGLYCEROL KINASE 2) DIACYLGLYCEROL KINASE |
AT5G22030 | Predictedin vivoAffinity Capture-MS | FSW = 0.0456
| Unknown | UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G04500 | PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 47 |
AT5G54940 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.0269
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G09020 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0329
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT2G06040 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.0788
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT3G18860 | PredictedPhenotypic Suppression | FSW = 0.0245
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0363
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.0116
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT5G50320 | PredictedPhenotypic Enhancement | FSW = 0.0080
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G51940 | PredictedPhenotypic Suppression | FSW = 0.0274
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G61650 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0334
| Unknown | CYCP42 (CYCLIN P42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G15475 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0581
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT2G44740 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0494
| Unknown | CYCP41 (CYCLIN P41) CYCLIN-DEPENDENT PROTEIN KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454