Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16630 - ( RAD4 damaged DNA binding )
49 Proteins interacs with AT5G16630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G66658 | PredictedAffinity Capture-MS | FSW = 0.0295
| Class C:plastid | ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G80070 | PredictedAffinity Capture-MS | FSW = 0.0268
| Class C:plastid | SUS2 (ABNORMAL SUSPENSOR 2) |
AT5G63110 | PredictedPhenotypic Suppression | FSW = 0.0473
| Class C:plastid | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0114
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G07670 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G26110 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT1G23410 | Predictedtwo hybrid | FSW = 0.0697
| Unknown | UBIQUITIN EXTENSION PROTEIN PUTATIVE / 40S RIBOSOMAL PROTEIN S27A (RPS27AA) |
AT4G37010 | Predictedin vivoin vitro | FSW = 0.0142
| Unknown | CALTRACTIN PUTATIVE / CENTRIN PUTATIVE |
AT5G41370 | Predictedin vivoin vitro | FSW = 0.0547
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G44680 | PredictedPhenotypic Suppression | FSW = 0.0426
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G17590 | PredictedAffinity Capture-Western | FSW = 0.0078
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G19120 | PredictedPhenotypic Suppression | FSW = 0.0392
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G05060 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G56110 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT5G20730 | PredictedSynthetic Rescue | FSW = 0.0171
| Unknown | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT1G21190 | Predictedtwo hybrid | FSW = 0.0325
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G76860 | Predictedtwo hybrid | FSW = 0.0612
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G41360 | Predictedin vivoin vitro | FSW = 0.0456
| Unknown | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0277
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G10130 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT2G25490 | Predictedinteraction prediction | FSW = 0.0133
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G16190 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationPhenotypic Suppressioninteraction prediction | FSW = 0.0559
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G38470 | Predictedtwo hybridin vivotwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridin vivoAffinity Capture-MSCo-purificationPhenotypic Suppression | FSW = 0.0770
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G02540 | Predictedtwo hybridin vivo | FSW = 0.0849
| Unknown | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) DAMAGED DNA BINDING |
AT1G04020 | PredictedPhenotypic Enhancement | FSW = 0.0892
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT2G06040 | Predictedtwo hybridAffinity Capture-Westernbiochemical | FSW = 0.0857
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT2G47110 | Predictedtwo hybridinteraction prediction | FSW = 0.0535
| Unknown | UBQ6 PROTEIN BINDING |
AT1G52740 | PredictedPhenotypic Suppression | FSW = 0.0770
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G67500 | PredictedPhenotypic Enhancement | FSW = 0.0593
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G02760 | PredictedPhenotypic Enhancement | FSW = 0.0570
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G02820 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0450
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G15970 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT3G56440 | Predictedtwo hybrid | FSW = 0.0340
| Unknown | ATATG18D |
AT4G22140 | PredictedPhenotypic Suppression | FSW = 0.0425
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0699
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.0184
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G43500 | PredictedPhenotypic Suppression | FSW = 0.0713
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G57160 | PredictedPhenotypic Enhancement | FSW = 0.0478
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT4G16360 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT1G52380 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT4G15475 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0643
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT1G14400 | PredictedPhenotypic Enhancement | FSW = 0.0371
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT4G11080 | PredictedSynthetic Rescue | FSW = 0.0205
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT4G30510 | Predictedtwo hybridinteraction prediction | FSW = 0.0181
| Unknown | ATATG18B |
AT4G05320 | Predictedinteraction predictionCo-expression | FSW = 0.0717
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454