Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G66658 - ( ALDH22a1 (Aldehyde Dehydrogenase 22a1) 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase )

19 Proteins interacs with AT3G66658
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48000

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4469

Class C:

plastid

ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ATP BINDING / ALDEHYDE DEHYDROGENASE (NAD)
AT3G48170

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1397

Class C:

plastid

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G79440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5046

Class C:

plastid

ALDH5F1 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ NAD OR NADH BINDING / SUCCINATE-SEMIALDEHYDE DEHYDROGENASE
AT5G16630

Predicted

Affinity Capture-MS

FSW = 0.0295

Class C:

plastid

RAD4 DAMAGED DNA BINDING
AT1G07420

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0635

Class C:

plastid

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT1G74920

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4727

Class C:

plastid

ALDH10A8 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G59820

Predicted

Phenotypic Enhancement

FSW = 0.0430

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G13210

Predicted

interologs mapping

FSW = 0.0523

Unknown

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0096

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.0217

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G41500

Predicted

Gene fusion method

FSW = 0.0370

Unknown

EMB2776 NUCLEOTIDE BINDING
AT1G23800

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3990

Unknown

ALDH2B7 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT1G54100

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5046

Unknown

ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0064

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G24503

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4727

Unknown

ALDH2C4 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)/ CONIFERYL-ALDEHYDE DEHYDROGENASE
AT2G24270

Predicted

Phylogenetic profile method

FSW = 0.5046

Unknown

ALDH11A3 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+)
AT1G50270

Predicted

Gene fusion method

FSW = 0.0832

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G38730

Predicted

Gene fusion method

FSW = 0.1043

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454