Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09580 - ( emp24/gp25L/p24 family protein )
37 Proteins interacs with AT1G09580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | HISTONE H4 |
AT5G66680 | Predictedinterologs mapping | FSW = 0.0530
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G14010 | PredictedAffinity Capture-MSGene neighbors methodPhylogenetic profile method | FSW = 0.1244
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G07680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0822
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G10350 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G09180 | PredictedAffinity Capture-Western | FSW = 0.1364
| Unknown | ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING |
AT1G45000 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G52600 | PredictedAffinity Capture-MS | FSW = 0.0663
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT4G39180 | Predictedinterologs mapping | FSW = 0.0267
| Unknown | SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G77210 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G17520 | Predictedinterologs mapping | FSW = 0.1464
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G30050 | PredictedReconstituted Complex | FSW = 0.0885
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G56110 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT3G24350 | PredictedAffinity Capture-Western | FSW = 0.0595
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0055
| Unknown | ATPRB1 |
AT1G69460 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2929
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0128
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G52360 | Predictedinterologs mappingAffinity Capture-MS | FSW = 0.0114
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G52740 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT5G14850 | PredictedAffinity Capture-MS | FSW = 0.0418
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT1G09460 | PredictedAffinity Capture-Western | FSW = 0.0856
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT5G27970 | Predictedinterologs mapping | FSW = 0.0472
| Unknown | BINDING |
AT3G46460 | Predictedinterologs mapping | FSW = 0.1037
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT3G22480 | Predictedinterologs mapping | FSW = 0.0285
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT2G28850 | Predictedinterologs mapping | FSW = 0.1423
| Unknown | CYP710A3 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 3) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G20575 | Predictedinterologs mapping | FSW = 0.0612
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1013
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G05520 | PredictedReconstituted ComplexGene neighbors method | FSW = 0.1814
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT3G44340 | PredictedReconstituted Complex | FSW = 0.1686
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G18830 | PredictedReconstituted Complex | FSW = 0.0512
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G21900 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2420
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G57620 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3568
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G26690 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0741
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G29070 | PredictedPhylogenetic profile method | FSW = 0.1739
| Unknown | PROTEIN TRANSMEMBRANE TRANSPORTER |
AT3G10780 | PredictedPhylogenetic profile method | FSW = 0.2530
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454