Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G57620 - ( emp24/gp25L/p24 family protein )
51 Proteins interacs with AT1G57620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedPhenotypic Suppression | FSW = 0.0561
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0622
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G66680 | PredictedPhenotypic Enhancement | FSW = 0.0501
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G08710 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0191
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G14010 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.0805
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G22845 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1041
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0178
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G07100 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0854
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0175
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | HISTONE H4 |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.0547
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G52600 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.1067
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT1G56330 | PredictedAffinity Capture-Western | FSW = 0.1146
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT2G17520 | PredictedPhenotypic Enhancement | FSW = 0.1434
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.1300
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0410
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT3G14980 | PredictedReconstituted Complex | FSW = 0.0327
| Unknown | PHD FINGER TRANSCRIPTION FACTOR PUTATIVE |
AT4G25340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0401
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.1041
| Unknown | AAA-TYPE ATPASE FAMILY |
AT3G24350 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0749
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT1G69460 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2656
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G18830 | PredictedReconstituted Complex | FSW = 0.1602
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G26690 | PredictedAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1072
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.0701
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G52740 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G20575 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0217
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26450 | PredictedAffinity Capture-Western | FSW = 0.0561
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G79990 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0197
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.0181
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G34500 | PredictedPhenotypic Enhancement | FSW = 0.0776
| Unknown | CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.1235
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.0217
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G27110 | PredictedProtein-peptide | FSW = 0.0082
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT4G24040 | PredictedPhenotypic Enhancement | FSW = 0.1302
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT5G14850 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0519
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT3G01340 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0898
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G55380 | PredictedPhenotypic Enhancement | FSW = 0.0563
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT4G14160 | PredictedReconstituted Complexinteraction prediction | FSW = 0.1344
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G33950 | PredictedPhenotypic Suppression | FSW = 0.0935
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0446
| Unknown | BINDING |
AT5G43010 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | RPT4A ATPASE |
AT3G63460 | Predictedinteraction prediction | FSW = 0.0955
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G29070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2195
| Unknown | PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G21900 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2955
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G10780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2309
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G09580 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3568
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454