Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01040 - ( DCL1 (DICER-LIKE 1) ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III )
28 Proteins interacs with AT1G01040| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G20550
   | Experimentalpull down | FSW = 0.0065
| Class A:nucleusClass B:plastid | DDL (DAWDLE) |
| AT2G27100
| Experimentalprotein complementation assaysplit-reporter assay | FSW = 0.0580
| Class A:nucleusClass B:plastid | SE (SERRATE) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G03300
| Experimentalfar western blotting | FSW = 0.3844
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | DCL2 (DICER-LIKE 2) ATP BINDING / ATP-DEPENDENT HELICASE/ RNA BINDING / DOUBLE-STRANDED RNA BINDING / HELICASE/ NUCLEIC ACID BINDING / RIBONUCLEASE III |
| AT1G09700
| Experimentalfar western blottingpull downprotein complementation assayfar western blottingAffinity Capture-WesternReconstituted Complexcoimmunoprecipitationsplit-reporter assay | FSW = 0.2593
| Class A:nucleus | HYL1 (HYPONASTIC LEAVES 1) DOUBLE-STRANDED RNA BINDING / MIRNA BINDING / PROTEIN BINDING |
| AT5G19280
| Experimentalbiochemical | FSW = 0.0287
| Class B:plasma membranenucleusClass D:cytosol (p = 0.67) | KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G28380
| Experimentalfar western blotting | FSW = 0.1109
| Class B:nucleuscytosolClass D:cytosol (p = 0.67) | DRB2 (DSRNA-BINDING PROTEIN 2) DOUBLE-STRANDED RNA BINDING |
| AT5G41070
| Experimentalfar western blotting | FSW = 0.1428
| Unknown | DRB5 (DSRNA-BINDING PROTEIN 5) DOUBLE-STRANDED RNA BINDING |
| AT2G06510
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0298
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
| AT5G43530
| PredictedPhenotypic Suppression | FSW = 0.0736
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT4G34670
| Predictedtwo hybrid | FSW = 0.0139
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT4G02070
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0451
| Class C:nucleus | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
| AT1G75230
| PredictedPhenotypic EnhancementAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1003
| Class C:nucleus | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT5G20320
| PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.2939
| Class C:nucleus | DCL4 (DICER-LIKE 4) RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
| AT5G43060
| Predictedtwo hybrid | FSW = 0.0290
| Unknown | CYSTEINE PROTEINASE PUTATIVE / THIOL PROTEASE PUTATIVE |
| AT3G04840
| Predictedtwo hybrid | FSW = 0.0313
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
| AT5G47010
| PredictedShared biological functionCo-expression | FSW = 0.0823
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
| AT1G48410
| PredictedAffinity Capture-Westernin vivoShared biological functionCo-expression | FSW = 0.3876
| Unknown | AGO1 (ARGONAUTE 1) ENDORIBONUCLEASE/ MIRNA BINDING / PROTEIN BINDING / SIRNA BINDING |
| AT1G23260
| PredictedPhenotypic Enhancement | FSW = 0.1210
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G67500
| PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.1173
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
| AT2G02760
| PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0345
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
| AT4G25120 | PredictedSynthetic LethalitySynthetic Lethalitytwo hybridPhenotypic Enhancement | FSW = 0.0627
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
| AT5G10260
| PredictedPhenotypic Enhancement | FSW = 0.0139
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0256
| Unknown | BINDING |
| AT5G44750
| PredictedPhenotypic Enhancement | FSW = 0.0563
| Unknown | REV1 DNA-DIRECTED DNA POLYMERASE |
| AT1G10930
| PredictedPhenotypic Enhancement | FSW = 0.0260
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G43810
| Predictedco-fractionationCo-fractionationinterologs mapping | FSW = 0.1997
| Unknown | ZLL (ZWILLE) TRANSLATION INITIATION FACTOR |
| AT2G27880
| Predictedin vivo | FSW = 0.1428
| Unknown | AGO5 (ARGONAUTE 5) NUCLEIC ACID BINDING |
| AT1G69440
| PredictedShared biological functionCo-expression | FSW = 0.3403
| Unknown | AGO7 (ARGONAUTE7) NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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