Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47010 - ( LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP binding / DNA binding / RNA helicase/ hydrolase )
43 Proteins interacs with AT5G47010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0038
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0081
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G54080 | Predictedinteraction prediction | FSW = 0.0219
| Class C:plasma membrane | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT1G12920 | Predictedinteraction predictionAffinity Capture-WesternSynthetic Rescue | FSW = 0.0264
| Class C:plasma membrane | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT1G18070 | Predictedinteraction predictionReconstituted ComplexPhenotypic SuppressionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.0725
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT5G25780 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0208
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT4G35800 | Predictedin vitro | FSW = 0.0052
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G29900 | PredictedSynthetic Rescue | FSW = 0.0126
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT2G31660 | Predictedinteraction prediction | FSW = 0.0097
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT1G55870 | PredictedAffinity Capture-Western | FSW = 0.1094
| Unknown | AHG2 (ABA-HYPERSENSITIVE GERMINATION 2) NUCLEIC ACID BINDING / RIBONUCLEASE |
AT3G03300 | PredictedShared biological functionCo-expression | FSW = 0.1097
| Unknown | DCL2 (DICER-LIKE 2) ATP BINDING / ATP-DEPENDENT HELICASE/ RNA BINDING / DOUBLE-STRANDED RNA BINDING / HELICASE/ NUCLEIC ACID BINDING / RIBONUCLEASE III |
AT3G50670 | Predictedtwo hybridinteraction prediction | FSW = 0.0058
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G44530 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G14300 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complexinteraction prediction | FSW = 0.0556
| Unknown | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE |
AT5G20320 | PredictedShared biological functionCo-expression | FSW = 0.1412
| Unknown | DCL4 (DICER-LIKE 4) RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT1G19120 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0210
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G65700 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G01040 | PredictedShared biological functionCo-expression | FSW = 0.0823
| Unknown | DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT2G07727 | Predictedinterologs mapping | FSW = 0.0124
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
ATMG01360 | Predictedinterologs mapping | FSW = 0.0205
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 1 |
AT1G48410 | PredictedShared biological functionCo-expression | FSW = 0.1516
| Unknown | AGO1 (ARGONAUTE 1) ENDORIBONUCLEASE/ MIRNA BINDING / PROTEIN BINDING / SIRNA BINDING |
AT1G03360 | PredictedAffinity Capture-Western | FSW = 0.0900
| Unknown | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE |
AT1G33980 | PredictedAffinity Capture-WesternAffinity Capture-Westernin vivo | FSW = 0.2238
| Unknown | SMG-4/UPF3 FAMILY PROTEIN |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G32415 | PredictedAffinity Capture-Western | FSW = 0.0523
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT2G39260 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridPhenotypic SuppressionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSin vivoin vitrotwo hybrid | FSW = 0.3316
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT3G61620 | PredictedAffinity Capture-Western | FSW = 0.0537
| Unknown | RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT4G20760 | PredictedAffinity Capture-Western | FSW = 0.1333
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G34110 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G13570 | Predictedinteraction predictionAffinity Capture-Westernin vitro | FSW = 0.0498
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
AT1G54290 | PredictedSynthetic Lethality | FSW = 0.0150
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G55150 | Predictedinteraction predictiontwo hybridtwo hybrid | FSW = 0.0147
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT1G59660 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0756
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT2G03820 | Predictedinteraction predictiontwo hybridtwo hybrid | FSW = 0.0167
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT1G79730 | PredictedPhenotypic Suppression | FSW = 0.0171
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT3G14100 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT5G35930 | PredictedSynthetic Rescue | FSW = 0.0248
| Unknown | AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN |
AT5G51300 | PredictedSynthetic LethalityCo-expression | FSW = 0.0248
| Unknown | SPLICING FACTOR-RELATED |
AT1G17370 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
AT1G10390 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0494
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT3G13224 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0333
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G09900 | Predictedinteraction predictiontwo hybrid | FSW = 0.0111
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT1G69440 | PredictedShared biological functionCo-expression | FSW = 0.1076
| Unknown | AGO7 (ARGONAUTE7) NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454