Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18070 - ( EF-1-alpha-related GTP-binding protein putative )
45 Proteins interacs with AT1G18070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedAffinity Capture-Western | FSW = 0.0245
| Class C:vacuole | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07920 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.1204
| Class C:vacuole | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G56070 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.0105
| Class C:vacuole | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G12580 | PredictedCo-purificationReconstituted ComplexAffinity Capture-Western | FSW = 0.0334
| Class C:vacuole | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G07930 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0301
| Class C:vacuole | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G16030 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0508
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G78630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0055
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0539
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G60390 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0494
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0495
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G12110 | PredictedAffinity Capture-Western | FSW = 0.0204
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G42740 | PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G47010 | Predictedinteraction predictionReconstituted ComplexPhenotypic SuppressionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.0725
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT4G25740 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
AT1G12920 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexReconstituted ComplexPhenotypic Enhancementinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted ComplexAffinity Capture-MStwo hybridAffinity Capture-Westernbiochemical | FSW = 0.1121
| Unknown | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT3G53110 | Predictedinterologs mapping | FSW = 0.0366
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT2G01680 | PredictedGene fusion method | FSW = 0.0334
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT5G20920 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0230
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT3G04610 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | FLK (FLOWERING LOCUS KH DOMAIN) RNA BINDING / NUCLEIC ACID BINDING |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G16190 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0360
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G52650 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10C) |
AT5G38470 | PredictedAffinity Capture-MS | FSW = 0.0374
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G26618 | Predictedin vivotwo hybrid | FSW = 0.0690
| Unknown | ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3) TRANSLATION RELEASE FACTOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0012
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G48630 | Predictedtwo hybridtwo hybrid | FSW = 0.0153
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G49760 | Predictedin vitroAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybridinterologs mappingCo-expression | FSW = 0.0601
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT4G34110 | Predictedin vitrotwo hybrid | FSW = 0.0346
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G23570 | Predictedtwo hybridin vivoAffinity Capture-MS | FSW = 0.0463
| Unknown | SGS3 (SUPPRESSOR OF GENE SILENCING 3) |
AT1G13180 | Predictedtwo hybrid | FSW = 0.0436
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G32340 | PredictedReconstituted Complexinterologs mapping | FSW = 0.0678
| Unknown | NHL8 PROTEIN BINDING / ZINC ION BINDING |
AT1G74310 | Predictedinteraction predictionReconstituted ComplexReconstituted ComplexColocalization | FSW = 0.0478
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G39260 | PredictedReconstituted ComplexAffinity Capture-Westerninterologs mapping | FSW = 0.0216
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT1G65970 | PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE |
AT3G27000 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G46960 | PredictedPhenotypic Suppression | FSW = 0.0179
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT4G27650 | Predictedtwo hybridReconstituted Complextwo hybridReconstituted Complex | FSW = 0.0463
| Unknown | PEL1 (PELOTA) TRANSLATION RELEASE FACTOR |
AT1G65990 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | TYPE 2 PEROXIREDOXIN-RELATED / THIOL SPECIFIC ANTIOXIDANT / MAL ALLERGEN FAMILY PROTEIN |
AT1G22760 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0191
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G60610 | Predictedin vitroin vivo | FSW = 0.0406
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G10650 | Predictedin vitro | FSW = 0.1050
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G26100 | PredictedGene fusion method | FSW = 0.0350
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454