Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03300 - ( DCL2 (DICER-LIKE 2) ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III )
9 Proteins interacs with AT3G03300Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G09700 | Experimentalfar western blotting | FSW = 0.4500
| Class A:nucleusClass B:cytosolClass D:plastid (p = 0.78) | HYL1 (HYPONASTIC LEAVES 1) DOUBLE-STRANDED RNA BINDING / MIRNA BINDING / PROTEIN BINDING |
AT3G43920 | Experimentalfar western blotting | FSW = 0.2616
| Class A:nucleusClass B:cytosolClass D:plastid (p = 0.78) | RIBONUCLEASE III FAMILY PROTEIN |
AT1G01040 | Experimentalfar western blotting | FSW = 0.3844
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT5G41070 | Experimentalfar western blotting | FSW = 0.2742
| Unknown | DRB5 (DSRNA-BINDING PROTEIN 5) DOUBLE-STRANDED RNA BINDING |
AT5G20320 | PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.4635
| Class C:nucleus | DCL4 (DICER-LIKE 4) RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT5G47010 | PredictedShared biological functionCo-expression | FSW = 0.1097
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT1G48410 | PredictedShared biological functionCo-expression | FSW = 0.5765
| Unknown | AGO1 (ARGONAUTE 1) ENDORIBONUCLEASE/ MIRNA BINDING / PROTEIN BINDING / SIRNA BINDING |
AT5G43810 | PredictedAffinity Capture-WesternAffinity Capture-Westernin vivo | FSW = 0.2177
| Unknown | ZLL (ZWILLE) TRANSLATION INITIATION FACTOR |
AT5G67540 | Predictedtwo hybrid | FSW = 0.0208
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454