Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G49980 - ( DNA-directed DNA polymerase/ damaged DNA binding )
27 Proteins interacs with AT1G49980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.1591
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0372
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT3G29320 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | GLUCAN PHOSPHORYLASE PUTATIVE |
AT3G12110 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G16970 | PredictedPhenotypic Enhancement | FSW = 0.0767
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT4G02070 | Predictedinterologs mapping | FSW = 0.1217
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT1G75230 | PredictedPhenotypic Enhancement | FSW = 0.1333
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT1G07370 | Predictedtwo hybridtwo hybridPhenotypic Enhancement | FSW = 0.1036
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G37470 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | HISTONE H2B PUTATIVE |
AT4G22380 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.1832
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT1G13060 | PredictedPhenotypic Suppression | FSW = 0.0223
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G31970 | PredictedPhenotypic Enhancement | FSW = 0.0929
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT1G09020 | PredictedAffinity Capture-MS | FSW = 0.1002
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G21710 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0741
| Unknown | OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE |
AT1G23260 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2533
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G67500 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.2576
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.0532
| Unknown | HDA15 HISTONE DEACETYLASE |
AT4G02460 | Predictedinterologs mapping | FSW = 0.1263
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT4G16970 | PredictedPhenotypic Enhancement | FSW = 0.0505
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G25120 | PredictedPhenotypic Enhancement | FSW = 0.0768
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0407
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G44750 | PredictedAffinity Capture-WesternPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1377
| Unknown | REV1 DNA-DIRECTED DNA POLYMERASE |
AT1G78870 | PredictedPhenotypic Enhancement | FSW = 0.1226
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G01090 | PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0606
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT1G49760 | PredictedGene fusion method | FSW = 0.0059
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454