Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30950 - ( FAD6 (FATTY ACID DESATURASE 6) omega-6 fatty acid desaturase )
24 Proteins interacs with AT4G30950Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G48850 | PredictedAffinity Capture-MS | FSW = 0.0269
| Class C:plastid | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
AT4G38200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4952
| Class C:plastid | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G63400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2024
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT4G35310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0629
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.1428
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT4G28060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4762
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1233
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G05000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1515
| Unknown | TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN |
AT1G10090 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0078
| Unknown | UNKNOWN PROTEIN |
AT1G10210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0233
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0230
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G31260 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0243
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G36060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0525
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT1G11475 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.1531
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT4G31770 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G06620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5022
| Unknown | SDG38 (SET DOMAIN PROTEIN 38) |
AT5G61580 | PredictedAffinity Capture-MS | FSW = 0.2797
| Unknown | PFK4 (PHOSPHOFRUCTOKINASE 4) 6-PHOSPHOFRUCTOKINASE |
AT4G32840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3232
| Unknown | PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE |
AT5G24410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2332
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454