Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G34770 - ( MAGE-8 antigen-related )
41 Proteins interacs with AT1G34770| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G32470
   | Predictedtwo hybrid | FSW = 0.0209
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT5G66680
| PredictedAffinity Capture-MS | FSW = 0.0037
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
| AT5G02450
| PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36C) |
| AT4G34700
| Predictedtwo hybrid | FSW = 0.0759
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
| AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | BINDING |
| AT5G57870
| PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
| AT5G06290
| Predictedtwo hybrid | FSW = 0.0084
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G29410
| PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | 60S RIBOSOMAL PROTEIN L28 (RPL28C) |
| AT5G61170
| PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19C) |
| AT5G66180
| Predictedtwo hybrid | FSW = 0.0200
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BACTERIAL FMU (SUN)/EUKARYOTIC NUCLEOLAR NOL1/NOP2P (INTERPROIPR001678) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NOL1/NOP2/SUN FAMILY PROTEIN (TAIRAT1G065601) HAS 5021 BLAST HITS TO 4182 PROTEINS IN 1157 SPECIES ARCHAE - 270 BACTERIA - 3133 METAZOA - 499 FUNGI - 156 PLANTS - 103 VIRUSES - 0 OTHER EUKARYOTES - 860 (SOURCE NCBI BLINK) |
| AT3G54350
| Predictedtwo hybrid | FSW = 0.0422
| Unknown | EMB1967 (EMBRYO DEFECTIVE 1967) |
| AT1G17350
| Predictedtwo hybrid | FSW = 0.0606
| Unknown | AUXIN-INDUCED-RELATED / INDOLE-3-ACETIC ACID INDUCED-RELATED |
| AT5G25450
| Predictedtwo hybrid | FSW = 0.0445
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G18380
| PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
| AT3G56340
| PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT2G29540
| Predictedtwo hybrid | FSW = 0.0102
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G17690
| Predictedtwo hybrid | FSW = 0.0364
| Unknown | UNKNOWN PROTEIN |
| AT1G28120
| Predictedtwo hybrid | FSW = 0.0727
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UBIQUITIN THIOESTERASE OTUBAIN (INTERPROIPR016615) OVARIAN TUMOUR OTUBAIN (INTERPROIPR003323) HAS 295 BLAST HITS TO 295 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 150 FUNGI - 50 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
| AT2G43770
| PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G12320
| Predictedtwo hybrid | FSW = 0.0239
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT1G57860
| PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | 60S RIBOSOMAL PROTEIN L21 |
| AT2G15270
| Predictedtwo hybrid | FSW = 0.0200
| Unknown | UNKNOWN PROTEIN |
| AT3G14890
| Predictedtwo hybrid | FSW = 0.0239
| Unknown | PHOSPHOESTERASE |
| AT3G28900
| PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | 60S RIBOSOMAL PROTEIN L34 (RPL34C) |
| AT3G54170
| Predictedtwo hybrid | FSW = 0.0227
| Unknown | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G59430
| Predictedtwo hybrid | FSW = 0.0200
| Unknown | UNKNOWN PROTEIN |
| AT4G14320 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
| AT4G25730
| Predictedtwo hybrid | FSW = 0.0096
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
| AT4G26750
| Predictedtwo hybrid | FSW = 0.0135
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT5G01670
| Predictedtwo hybrid | FSW = 0.0073
| Unknown | ALDOSE REDUCTASE PUTATIVE |
| AT5G06600
| PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT5G15810
| Predictedtwo hybrid | FSW = 0.0200
| Unknown | N2N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE FAMILY PROTEIN |
| AT5G39710
| PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | EMB2745 (EMBRYO DEFECTIVE 2745) |
| AT5G47080
| PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
| AT5G56150
| Predictedtwo hybrid | FSW = 0.0079
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
| AT5G61530
| Predictedtwo hybrid | FSW = 0.0158
| Unknown | SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN |
| AT5G67540
| PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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