Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43770 - ( transducin family protein / WD-40 repeat family protein )
30 Proteins interacs with AT2G43770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18165 | Experimental | FSW = 0.1433
| Unknown | MOS4 (MODIFIER OF SNC14) |
AT1G68070 | PredictedGene fusion method | FSW = 0.0527
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G44110 | PredictedGene fusion method | FSW = 0.0279
| Unknown | ATJ3 PROTEIN BINDING |
AT1G20960 | PredictedAffinity Capture-MS | FSW = 0.0931
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1175
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.0721
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G80070 | Predictedin vivoAffinity Capture-MSCo-expression | FSW = 0.0818
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT2G28760 | PredictedGene fusion method | FSW = 0.0298
| Unknown | NAD-DEPENDENT EPIMERASE/DEHYDRATASE FAMILY PROTEIN |
AT1G06220 | PredictedAffinity Capture-MS | FSW = 0.3282
| Unknown | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT5G16990 | PredictedGene fusion method | FSW = 0.0346
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G42270 | PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE PUTATIVE |
AT5G25230 | PredictedAffinity Capture-MS | FSW = 0.1853
| Unknown | ELONGATION FACTOR TU FAMILY PROTEIN |
AT5G04620 | PredictedGene fusion method | FSW = 0.0606
| Unknown | ATBIOF (BIOTIN F) 8-AMINO-7-OXONONANOATE SYNTHASE/ TRANSAMINASE |
AT4G23930 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HARPIN-INDUCED 1 (INTERPROIPR010847) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROLINE-RICH FAMILY PROTEIN (TAIRAT1G644501) HAS 80 BLAST HITS TO 75 PROTEINS IN 8 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT1G34770 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | MAGE-8 ANTIGEN-RELATED |
AT4G03430 | PredictedAffinity Capture-MSin vivoAffinity Capture-MS | FSW = 0.0863
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.0475
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT3G22480 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G38780 | Predictedin vivoAffinity Capture-MS | FSW = 0.1853
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G52730 | PredictedGene fusion methodCo-expression | FSW = 0.0552
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G63010 | PredictedGene fusion methodCo-expression | FSW = 0.0808
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G49660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0145
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G02730 | PredictedPhylogenetic profile method | FSW = 0.0529
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G78290 | PredictedGene fusion method | FSW = 0.0108
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G06260 | PredictedGene fusion method | FSW = 0.0173
| Unknown | CYSTEINE PROTEINASE PUTATIVE |
AT2G28940 | PredictedGene fusion method | FSW = 0.0269
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G69100 | PredictedGene fusion method | FSW = 0.0256
| Unknown | ASPARTIC-TYPE ENDOPEPTIDASE |
AT5G55970 | PredictedGene fusion method | FSW = 0.1765
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454