Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23930 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN endomembrane system EXPRESSED IN 11 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Harpin-induced 1 (InterProIPR010847) BEST Arabidopsis thaliana protein match is proline-rich family protein (TAIRAT1G644501) Has 80 Blast hits to 75 proteins in 8 species Archae - 0 Bacteria - 0 Metazoa - 0 Fungi - 0 Plants - 80 Viruses - 0 Other Eukaryotes - 0 (source NCBI BLink) )
20 Proteins interacs with AT4G23930| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
| AT4G38920 | Predictedtwo hybrid | FSW = 0.0464
| Unknown | ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) ATPASE |
AT3G16630
   | Predictedtwo hybrid | FSW = 0.0580
| Unknown | KINESIN-13A ATP BINDING / MICROTUBULE MOTOR |
| AT1G12310
| Predictedtwo hybrid | FSW = 0.0300
| Unknown | CALMODULIN PUTATIVE |
| AT1G02970
| Predictedtwo hybrid | FSW = 0.0652
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
| AT1G04200
| Predictedtwo hybrid | FSW = 0.0497
| Unknown | UNKNOWN PROTEIN |
| AT1G11800
| Predictedtwo hybrid | FSW = 0.0348
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT1G33270
| Predictedtwo hybrid | FSW = 0.1391
| Unknown | PATATIN-RELATED |
| AT1G80910
| Predictedtwo hybrid | FSW = 0.1391
| Unknown | UNKNOWN PROTEIN |
| AT2G43770
| Predictedtwo hybrid | FSW = 0.0211
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0239
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT3G27530
| Predictedtwo hybrid | FSW = 0.0094
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
| AT3G48150
| Predictedtwo hybrid | FSW = 0.0313
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
| AT4G11330
| Predictedtwo hybrid | FSW = 0.0686
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT4G15930
| Predictedtwo hybrid | FSW = 0.0094
| Unknown | MICROTUBULE MOTOR |
| AT4G24110
| Predictedtwo hybrid | FSW = 0.0775
| Unknown | UNKNOWN PROTEIN |
| AT5G26640
| Predictedtwo hybrid | FSW = 0.0395
| Unknown | UNKNOWN PROTEIN |
| AT5G28290
| Predictedtwo hybrid | FSW = 0.0933
| Unknown | ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G39930
| Predictedtwo hybrid | FSW = 0.0933
| Unknown | CLPS5 (CLP1-SIMILAR PROTEIN 5) |
| AT5G55960
| Predictedtwo hybrid | FSW = 0.0324
| Unknown | UNKNOWN PROTEIN |
| AT5G56580
| Predictedtwo hybrid | FSW = 0.0640
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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