Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80530 - ( nodulin family protein )
14 Proteins interacs with AT1G80530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | PredictedAffinity Capture-Westerntwo hybridSynthetic Rescue | FSW = 0.0274
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT5G06290 | Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridSynthetic Rescue | FSW = 0.0700
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT3G53870 | Predictedtwo hybrid | FSW = 0.0246
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G18800 | PredictedSynthetic Lethality | FSW = 0.0382
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT5G47630 | PredictedSynthetic Lethality | FSW = 0.1227
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G10210 | Predictedinterologs mapping | FSW = 0.0476
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.0443
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G55300 | PredictedSynthetic Lethality | FSW = 0.0244
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G13950 | Predictedsynthetic growth defect | FSW = 0.0345
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT3G54490 | Predictedtwo hybrid | FSW = 0.0523
| Unknown | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G13860 | Predictedbiochemical | FSW = 0.0416
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G38030 | PredictedSynthetic Lethality | FSW = 0.0800
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT4G34950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2353
| Unknown | NODULIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454