Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57290 - ( EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) translation initiation factor )
23 Proteins interacs with AT3G57290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02090 | ExperimentalAffinity Capture-Westerntwo hybridReconstituted Complexcoimmunoprecipitation | FSW = 0.1567
| Class D:cytosol (p = 0.67) | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT1G10840 | ExperimentalAffinity Capture-Western | FSW = 0.3333
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT3G56150 | ExperimentalAffinity Capture-Westerntwo hybridcoimmunoprecipitation | FSW = 0.1785
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT5G27640 | Experimentalco-fractionationCo-fractionation | FSW = 0.0988
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT2G20580 | PredictedAffinity Capture-Western | FSW = 0.0545
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G25754 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.1333
| Class C:plasma membrane | UNKNOWN PROTEIN |
AT4G11420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2427
| Class C:plasma membrane | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT2G20140 | PredictedSynthetic Lethalityinterologs mappingAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.1290
| Class C:plasma membrane | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT3G11400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1405
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT5G25780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1176
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT2G39990 | PredictedAffinity Capture-MS | FSW = 0.2028
| Unknown | EIF2 TRANSLATION INITIATION FACTOR |
AT2G45640 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT5G53770 | Predictedtwo hybridtwo hybrid | FSW = 0.0068
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT3G22860 | Predictedtwo hybrid | FSW = 0.1240
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT5G54940 | PredictedAffinity Capture-MS | FSW = 0.0866
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G20610 | PredictedDosage Growth Defect | FSW = 0.0121
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G64520 | PredictedSynthetic LethalityAffinity Capture-Westerninterologs mapping | FSW = 0.0706
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G46290 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3200
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE |
AT3G02200 | PredictedAffinity Capture-MS | FSW = 0.2874
| Unknown | PROTEASOME FAMILY PROTEIN |
AT4G20980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingfar western blottingAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.2634
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
AT5G09900 | PredictedAffinity Capture-WesternPhenotypic Suppressioninterologs mappingsynthetic growth defecttwo hybrid | FSW = 0.0866
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT4G38630 | PredictedAffinity Capture-Western | FSW = 0.0230
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G25757 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.1109
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454