Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34620 - ( SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) structural constituent of ribosome )

37 Proteins interacs with AT4G34620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

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FSW = 0.1593

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT3G03780

Predicted

Affinity Capture-MS

FSW = 0.0400

Class C:

plastid

 ATMS2 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE
AT3G63490

Predicted

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FSW = 0.2046

Class C:

plastid

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT2G33800

Predicted

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FSW = 0.3469

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT5G23140

Predicted

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FSW = 0.0947

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT4G30690

Predicted

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FSW = 0.1812

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G04270

Predicted

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FSW = 0.2504

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT3G18680

Predicted

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FSW = 0.1641

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT4G04350

Predicted

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FSW = 0.0586

Class C:

plastid

 EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G74970

Predicted

Affinity Capture-MS

FSW = 0.2045

Class C:

plastid

 RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02260

Predicted

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FSW = 0.2845

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
ATCG00180Predicted

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FSW = 0.2598

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00740Predicted

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FSW = 0.1733

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
ATCG00380Predicted

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FSW = 0.3322

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00800Predicted

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FSW = 0.3492

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.2426

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.3651

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT4G37910

Predicted

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FSW = 0.0412

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT2G42520

Predicted

Affinity Capture-MS

FSW = 0.0204

Unknown

 DEAD BOX RNA HELICASE PUTATIVE
AT3G09210

Predicted

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FSW = 0.2743

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT3G03600

Predicted

Affinity Capture-MS

FSW = 0.1265

Unknown

 RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G45240

Predicted

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FSW = 0.1091

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT2G20060

Predicted

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FSW = 0.3853

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G49080

Predicted

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FSW = 0.2358

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT2G17510

Predicted

pull down

FSW = 0.2065

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT2G39140

Predicted

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FSW = 0.0847

Unknown

 SVR1 (SUPPRESSOR OF VARIEGATION 1) RNA BINDING / PSEUDOURIDINE SYNTHASE
AT3G22310

Predicted

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FSW = 0.3091

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G21220

Predicted

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FSW = 0.2102

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT5G51140

Predicted

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FSW = 0.2513

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G64650

Predicted

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FSW = 0.2094

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT2G36930

Predicted

Affinity Capture-MS

FSW = 0.0108

Unknown

 ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G30650

Predicted

Affinity Capture-MS

FSW = 0.1391

Unknown

 CATALYTIC
AT1G49400

Predicted

Affinity Capture-MS

FSW = 0.1016

Unknown

 EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G15810

Predicted

Affinity Capture-MS

FSW = 0.1636

Unknown

 RIBOSOMAL PROTEIN S15 FAMILY PROTEIN
AT1G64600

Predicted

Affinity Capture-MS

FSW = 0.1739

Unknown

 COPPER ION BINDING / METHYLTRANSFERASE
AT1G14400

Predicted

synthetic growth defect

FSW = 0.0028

Unknown

 UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G28350Predicted

two hybrid

FSW = 0.0444

Unknown

 ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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