Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G49080 - ( ribosomal protein S9 family protein )
56 Proteins interacs with AT3G49080| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G05410
   | Experimental | FSW = 0.0080
| Unknown | DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT5G41790
| Predictedpull down | FSW = 0.0979
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
| AT2G29990
| Predictedpull down | FSW = 0.0123
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT1G65540
| PredictedAffinity Capture-MS | FSW = 0.0693
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT2G33800
| Predictedpull down | FSW = 0.3514
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT5G56940
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1875
| Unknown | RIBOSOMAL PROTEIN S16 FAMILY PROTEIN |
| AT4G30690
| Predictedpull down | FSW = 0.2451
| Unknown | TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN |
| AT4G34620
| Predictedpull down | FSW = 0.2358
| Unknown | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G02260
| Predictedpull down | FSW = 0.2790
| Unknown | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
| AT2G25830
| Predictedpull down | FSW = 0.0353
| Unknown | YEBC-RELATED |
| AT4G11175
| Predictedpull down | FSW = 0.0340
| Unknown | TRANSLATION INITIATION FACTOR IF-1 CHLOROPLAST PUTATIVE |
| AT5G66470
| Predictedpull down | FSW = 0.1458
| Unknown | GTP BINDING / RNA BINDING |
| AT5G30510
| Predictedpull down | FSW = 0.2300
| Unknown | RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G55220
| Predictedpull down | FSW = 0.1064
| Unknown | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
| AT1G78630
| Predictedpull down | FSW = 0.2055
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| ATCG01240 | Predictedpull downAffinity Capture-MS | FSW = 0.4057
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| ATCG00380 | Predictedpull down | FSW = 0.3991
| Unknown | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
| ATCG00800 | Predictedpull down | FSW = 0.2827
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG00830 | Predictedpull down | FSW = 0.2935
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG00160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2794
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| ATCG00820 | PredictedAffinity Capture-MS | FSW = 0.2738
| Unknown | ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT4G38680
| Predictedpull down | FSW = 0.1923
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT1G75230
| Predictedpull down | FSW = 0.0403
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT4G02580
| Predictedpull down | FSW = 0.0552
| Unknown | NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE |
| AT5G02050
| PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
| AT4G30930
| Predictedpull down | FSW = 0.1988
| Unknown | NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G65720
| Predictedpull down | FSW = 0.0261
| Unknown | NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE |
| AT2G41460
| Predictedpull down | FSW = 0.0672
| Unknown | ARP DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE |
| AT1G79500
| Predictedpull down | FSW = 0.1142
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0036
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT5G45190
| Predictedtwo hybrid | FSW = 0.0098
| Unknown | CYCLIN FAMILY PROTEIN |
| AT1G11780
| Predictedpull down | FSW = 0.0545
| Unknown | OXIDOREDUCTASE 2OG-FE(II) OXYGENASE FAMILY PROTEIN |
| AT1G66520
| Predictedpull down | FSW = 0.0525
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
| AT1G73740
| Predictedpull down | FSW = 0.0896
| Unknown | GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN |
| AT2G01440
| Predictedpull down | FSW = 0.1270
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT2G17510
| Predictedpull down | FSW = 0.1870
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT2G39140
| Predictedpull down | FSW = 0.0849
| Unknown | SVR1 (SUPPRESSOR OF VARIEGATION 1) RNA BINDING / PSEUDOURIDINE SYNTHASE |
| AT2G41880
| Predictedpull down | FSW = 0.0226
| Unknown | GK-1 (GUANYLATE KINASE 1) GUANYLATE KINASE |
| AT3G13180
| Predictedpull down | FSW = 0.1429
| Unknown | NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN |
| AT3G22310
| Predictedpull down | FSW = 0.2297
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
| AT3G24560
| Predictedpull down | FSW = 0.1429
| Unknown | RSY3 (RASPBERRY 3) |
| AT4G12740
| Predictedpull down | FSW = 0.0849
| Unknown | ADENINE-DNA GLYCOSYLASE-RELATED / MYH-RELATED |
| AT4G21220
| Predictedpull down | FSW = 0.1971
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
| AT4G26780
| Predictedpull down | FSW = 0.0497
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
| AT4G26860
| Predictedpull down | FSW = 0.0356
| Unknown | PYRIDOXAL PHOSPHATE BINDING |
| AT4G29540
| Predictedpull down | FSW = 0.1270
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
| AT4G36020
| Predictedpull down | FSW = 0.0893
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT5G15390
| Predictedpull down | FSW = 0.0552
| Unknown | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
| AT5G63120
| Predictedpull down | FSW = 0.0988
| Unknown | ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30) |
| AT5G64670
| Predictedpull down | FSW = 0.1600
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
| ATCG01230 | Predictedpull down | FSW = 0.2596
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
| AT5G10620
| Predictedpull down | FSW = 0.0568
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SPOUT METHYLTRANSFERASE PREDICTED (INTERPROIPR003742) HAS 3142 BLAST HITS TO 3142 PROTEINS IN 1101 SPECIES ARCHAE - 27 BACTERIA - 2338 METAZOA - 0 FUNGI - 0 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 755 (SOURCE NCBI BLINK) |
| AT4G34910
| PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
| AT1G64600
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2034
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
| AT2G30660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0952
| Unknown | 3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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