Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G05410 - ( DREB2A DNA binding / transcription activator/ transcription factor )
31 Proteins interacs with AT5G05410| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G20960
   | Experimental | FSW = 0.0059
| Class A:nucleusClass B:unclearClass D:mitochondrion (p = 0.82) | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G18440
| Experimental | FSW = 0.1176
| Class A:nucleusClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | UNKNOWN PROTEIN |
| AT4G21670
| Experimental | FSW = 0.0336
| Class A:nucleusClass D:nucleus (p = 0.78) | CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) DOUBLE-STRANDED RNA BINDING / NUCLEOTIDE PHOSPHATASE |
| AT1G71930
| Experimental | FSW = 0.0735
| Class A:nucleusClass D:nucleus (p = 0.78) | VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
| AT1G32230
| Experimentalpull down | FSW = 0.0556
| Class A:nucleusClass D:nucleus (p = 0.78) | RCD1 (RADICAL-INDUCED CELL DEATH1) PROTEIN BINDING |
| AT3G51260
| Experimental | FSW = 0.0086
| Class B:vacuoleplastidnucleusClass D:mitochondrion (p = 0.82) | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G15580
| Experimental | FSW = 0.0306
| Class B:vacuolenucleuscytoskeletonClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | APG8H (AUTOPHAGY 8H) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE/ MICROTUBULE BINDING |
| AT1G68560
| Experimental | FSW = 0.0672
| Class B:plastidnucleusextracellularClass D:mitochondrion (p = 0.82) | XYL1 (ALPHA-XYLOSIDASE 1) ALPHA-N-ARABINOFURANOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLAN 14-BETA-XYLOSIDASE |
| AT3G25920
| Experimental | FSW = 0.0245
| Class B:plastidnucleusClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | RPL15 STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G46780
| Experimental | FSW = 0.0245
| Class B:plastidnucleusClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16) BINDING / CATALYTIC |
| AT1G31817
| Experimental | FSW = 0.0245
| Class B:plastidnucleusClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | NFD3 (NUCLEAR FUSION DEFECTIVE 3) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G53280
| Experimental | FSW = 0.0245
| Class B:plastidnucleusClass D:mitochondrion (p = 0.82) | DJ-1 FAMILY PROTEIN |
| AT2G35500
| Experimental | FSW = 0.0245
| Class B:plastidnucleusClass D:mitochondrion (p = 0.82) | SHIKIMATE KINASE-RELATED |
| AT1G31180
| Experimental | FSW = 0.0362
| Class B:plastidnucleusClass D:mitochondrion (p = 0.82) | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
| AT3G04260
| Experimental | FSW = 0.1176
| Class B:plastidnucleus | PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3) DNA BINDING / NUCLEIC ACID BINDING |
| AT1G19835
| Experimental | FSW = 0.0515
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | UNKNOWN PROTEIN |
| AT1G70300
| Experimental | FSW = 0.0256
| Class B:plasma membranenucleusClass D:mitochondrion (p = 0.82) | KUP6 POTASSIUM ION TRANSMEMBRANE TRANSPORTER |
| AT5G13430
| Experimental | FSW = 0.0627
| Class B:nucleusmitochondrionClass D:mitochondrion (p = 0.82) | UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE |
| AT3G11020
| Experimental | FSW = 0.0527
| Class D:nucleus (p = 0.78)mitochondrion (p = 0.82) | DREB2B (DRE/CRT-BINDING PROTEIN 2B) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT2G30580
| Experimentaltwo hybrid | FSW = 0.1176
| Unknown | DRIP2 (DREB2A-INTERACTING PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT4G28910
| Experimental | FSW = 0.0784
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF1675 (INTERPROIPR012463) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN (TAIRAT3G072501) HAS 223 BLAST HITS TO 204 PROTEINS IN 56 SPECIES ARCHAE - 2 BACTERIA - 11 METAZOA - 48 FUNGI - 32 PLANTS - 89 VIRUSES - 3 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
| AT1G21560
| Experimental | FSW = 0.0941
| Unknown | UNKNOWN PROTEIN |
| AT4G36980
| Experimental | FSW = 0.0269
| Unknown | UNKNOWN PROTEIN |
| AT3G04480
| Experimental | FSW = 0.0784
| Unknown | ENDORIBONUCLEASE |
| AT3G49080
| Experimental | FSW = 0.0080
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
| AT1G20100
| Experimental | FSW = 0.0250
| Unknown | UNKNOWN PROTEIN |
| AT1G54440
| Experimental | FSW = 0.0134
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
| AT2G30350
| Experimental | FSW = 0.0672
| Unknown | ENDO/EXCINUCLEASE AMINO TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT4G26630
| Experimental | FSW = 0.0245
| Unknown | EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G556601) HAS 253164 BLAST HITS TO 95130 PROTEINS IN 2571 SPECIES ARCHAE - 852 BACTERIA - 27744 METAZOA - 108483 FUNGI - 29060 PLANTS - 10256 VIRUSES - 1718 OTHER EUKARYOTES - 75051 (SOURCE NCBI BLINK) |
| AT1G30460
| Experimental | FSW = 0.0613
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
| AT1G06770
| Experimentaltwo hybridReconstituted Complexprotein complementation assaybiochemicalsplit-reporter assayin vitro | FSW = 0.1176
| Unknown | DRIP1 (DREB2A-INTERACTING PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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