Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32230 - ( RCD1 (RADICAL-INDUCED CELL DEATH1) protein binding )
27 Proteins interacs with AT1G32230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G36060 | Experimental | FSW = 0.1333
| Class A:nucleusClass B:plastidcytosolClass D:nucleus (p = 0.78) | BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN |
AT3G16770 | Experimentaltwo hybrid | FSW = 0.0667
| Class A:nucleusClass B:plasma membraneClass D:nucleus (p = 0.78) | ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G06950 | Experimental | FSW = 0.0314
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | AHBP-1B DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT2G37630 | Experimentalpull down | FSW = 0.0667
| Class A:nucleusClass D:nucleus (p = 0.78) | AS1 (ASYMMETRIC LEAVES 1) DNA BINDING / PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
AT2G40340 | Experimental | FSW = 0.1935
| Class A:nucleusClass D:nucleus (p = 0.78) | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR PUTATIVE (DRE2B) |
AT5G05410 | Experimentalpull down | FSW = 0.0556
| Class A:nucleusClass D:nucleus (p = 0.78) | DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G74890 | Experimental | FSW = 0.0444
| Class A:nucleusClass D:nucleus (p = 0.78) | ARR15 (RESPONSE REGULATOR 15) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G01720 | Experimental | FSW = 0.0269
| Class A:nucleusClass D:nucleus (p = 0.78) | WRKY47 TRANSCRIPTION FACTOR |
AT2G01980 | Experimentalpull downtwo hybridReconstituted Complexin vitro | FSW = 0.0275
| Class B:plastidplasma membranenucleus | SOS1 (SALT OVERLY SENSITIVE 1) SODIUMHYDROGEN ANTIPORTER |
AT5G48250 | Experimentalpull down | FSW = 0.1067
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
AT1G19835 | Experimental | FSW = 0.0566
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | UNKNOWN PROTEIN |
AT4G28640 | Experimental | FSW = 0.0275
| Class D:nucleus (p = 0.78) | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11) TRANSCRIPTION FACTOR |
AT3G11020 | Experimental | FSW = 0.2500
| Class D:nucleus (p = 0.78) | DREB2B (DRE/CRT-BINDING PROTEIN 2B) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G06040 | Experimentaltwo hybridpull downtwo hybrid | FSW = 0.0889
| Class D:nucleus (p = 0.78) | STO (SALT TOLERANCE) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G22760 | Experimental | FSW = 0.1333
| Unknown | BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN |
AT5G54680 | Experimental | FSW = 0.0269
| Unknown | ILR3 (IAA-LEUCINE RESISTANT3) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G04060 | Experimental | FSW = 0.1067
| Unknown | ANAC046 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 46) TRANSCRIPTION FACTOR |
AT5G09330 | Experimental | FSW = 0.1333
| Unknown | ANAC082 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 82) TRANSCRIPTION FACTOR |
AT3G59060 | Experimental | FSW = 0.0324
| Unknown | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G61270 | Experimental | FSW = 0.0762
| Unknown | PIF7 (PHYTOCHROME-INTERACTING FACTOR7) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
AT1G32870 | Experimental | FSW = 0.0269
| Unknown | ANAC13 (ARABIDOPSIS THALIANA NAC DOMAIN PROTEIN 13) TRANSCRIPTION FACTOR |
AT2G33550 | Experimental | FSW = 0.0269
| Unknown | GT-2-RELATED |
AT2G02070 | Experimental | FSW = 0.1067
| Unknown | ATIDD5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 5) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G03760 | Experimental | FSW = 0.0324
| Unknown | ATCSLA09 MANNAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G09060 | Experimental | FSW = 0.1333
| Unknown | UNKNOWN PROTEIN |
AT4G00050 | Experimental | FSW = 0.0269
| Unknown | UNE10 (UNFERTILIZED EMBRYO SAC 10) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G35510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1333
| Unknown | SRO1 (SIMILAR TO RCD ONE 1) NAD+ ADP-RIBOSYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454