Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06950 - ( AHBP-1B DNA binding / transcription activator/ transcription factor/ transcription repressor )
14 Proteins interacs with AT5G06950| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G06960
   | Experimentalpull down | FSW = 0.4216
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78)cytosol (p = 0.67) | OBF5 (OCS-ELEMENT BINDING FACTOR 5) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G45110
| Experimentaltwo hybridprotein complementation assayone hybrid | FSW = 0.2048
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | NPR3 (NPR1-LIKE PROTEIN 3) PROTEIN BINDING |
| AT1G02450
| Experimental3 hybrid method | FSW = 0.3368
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | NIMIN1 (NIM1-INTERACTING 1) PROTEIN BINDING |
| AT1G22070
| Experimental | FSW = 0.3407
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | TGA3 DNA BINDING / CALMODULIN BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT1G64280
| Experimentalin vitrointeraction detection methodtwo hybridtwo hybridtwo hybridReconstituted Complextwo hybridReconstituted Complextwo hybridtwo hybridReconstituted Complextwo hybridpull downpull downinteraction detection methodtwo hybridReconstituted ComplexCo-purificationtwo hybridinteraction detection methodinferred by authorin vitro | FSW = 0.4839
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | NPR1 (NONEXPRESSER OF PR GENES 1) PROTEIN BINDING / TRANSCRIPTION ACTIVATOR |
| AT1G80840
| Experimental | FSW = 0.1176
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | WRKY40 TRANSCRIPTION FACTOR |
| AT1G32230
| Experimental | FSW = 0.0314
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | RCD1 (RADICAL-INDUCED CELL DEATH1) PROTEIN BINDING |
| AT5G08720
| Experimental | FSW = 0.0556
| Class B:nucleusmitochondrioncytosolClass D:nucleus (p = 0.78) | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION CONTAINS INTERPRO DOMAIN/S STREPTOMYCES CYCLASE/DEHYDRASE (INTERPROIPR005031) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G016502) HAS 578 BLAST HITS TO 324 PROTEINS IN 67 SPECIES ARCHAE - 1 BACTERIA - 248 METAZOA - 1 FUNGI - 0 PLANTS - 59 VIRUSES - 0 OTHER EUKARYOTES - 269 (SOURCE NCBI BLINK) |
| AT4G19660
| Experimentaltwo hybridtwo hybridone hybrid | FSW = 0.2208
| Class D:nucleus (p = 0.78) | NPR4 (NPR1-LIKE PROTEIN 4) PROTEIN BINDING |
| AT1G09415
| Experimental | FSW = 0.3743
| Unknown | NIMIN-3 (NIM1-INTERACTING 3) |
| AT1G28480
| Experimentalsplit-reporter assay | FSW = 0.1696
| Unknown | GRX480 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
| AT5G65410
| Experimental | FSW = 0.0588
| Unknown | HB25 (HOMEOBOX PROTEIN 25) DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
| AT3G02000
| Experimental | FSW = 0.0532
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
| AT3G12250
| PredictedGene fusion methodCo-expression | FSW = 0.4650
| Class C:nucleus | TGA6 (TGACG MOTIF-BINDING FACTOR 6) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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