Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08720 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN mitochondrion CONTAINS InterPro DOMAIN/s Streptomyces cyclase/dehydrase (InterProIPR005031) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT4G016502) Has 578 Blast hits to 324 proteins in 67 species Archae - 1 Bacteria - 248 Metazoa - 1 Fungi - 0 Plants - 59 Viruses - 0 Other Eukaryotes - 269 (source NCBI BLink) )

9 Proteins interacs with AT5G08720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G07670

Experimental

FSW = 0.0504

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

 PROTEASE-ASSOCIATED (PA) DOMAIN-CONTAINING PROTEIN
AT5G06950

Experimental

FSW = 0.0556

Class B:

nucleus

mitochondrion

cytosol

Class D:

nucleus (p = 0.78)

 AHBP-1B DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT1G74890

Experimental

two hybrid

FSW = 0.2307

Class B:

nucleus

mitochondrion

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 ARR15 (RESPONSE REGULATOR 15) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G10030

Experimental

FSW = 0.0697

Class B:

nucleus

mitochondrion

Class D:

nucleus (p = 0.78)

 TGA4 (TGACG MOTIF-BINDING FACTOR 4) DNA BINDING / CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT1G19050

Experimental

two hybrid

FSW = 0.1319

Class B:

nucleus

mitochondrion

Class D:

nucleus (p = 0.78)

 ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT1G02340

Experimental

FSW = 0.0556

Class B:

nucleus

mitochondrion

Class D:

nucleus (p = 0.78)

 HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G40670

Experimental

two hybrid

FSW = 0.1381

Class B:

mitochondrion

cytosol

Class D:

nucleus (p = 0.78)

 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT3G48100

Experimental

two hybrid

FSW = 0.0513

Class D:

nucleus (p = 0.78)

 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT3G57040

Experimental

two hybrid

FSW = 0.2689

Class D:

nucleus (p = 0.78)

 ARR9 (RESPONSE REGULATOR 9) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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