Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G02340 - ( HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA binding / protein binding / transcription factor )
14 Proteins interacs with AT1G02340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18790 | Experimental | FSW = 0.2408
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT2G32950 | Experimentaltwo hybridcoimmunoprecipitationin vitrotwo hybridAffinity Capture-Westerntwo hybridbiochemicalenzymatic studypull downpull downconfocal microscopyReconstituted ComplexAffinity Capture-Westerncoimmunoprecipitationin vitroaffinity technologyin vitro | FSW = 0.1620
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G09570 | Experimental | FSW = 0.3072
| Class A:nucleusClass B:cytosol | PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT4G25560 | Experimentalin vitroaffinity technologyAffinity Capture-WesternReconstituted ComplexPhenotypic Enhancementpull downconfocal microscopy | FSW = 0.0863
| Class A:nucleusClass D:nucleus (p = 0.78) | ATMYB18 (MYB DOMAIN PROTEIN 18) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G09530 | Experimentalin vitroReconstituted Complextwo hybrid | FSW = 0.2449
| Class A:nucleusClass D:nucleus (p = 0.78) | PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT2G46340 | Experimentaltwo hybridReconstituted Complexin vitrocoimmunoprecipitation | FSW = 0.0714
| Class A:nucleusClass D:nucleus (p = 0.78) | SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT2G35720 | Experimentalpull down | FSW = 0.0426
| Class B:unclearnucleus | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G08720 | Experimental | FSW = 0.0556
| Class B:nucleusmitochondrionClass D:nucleus (p = 0.78) | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION CONTAINS INTERPRO DOMAIN/S STREPTOMYCES CYCLASE/DEHYDRASE (INTERPROIPR005031) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G016502) HAS 578 BLAST HITS TO 324 PROTEINS IN 67 SPECIES ARCHAE - 1 BACTERIA - 248 METAZOA - 1 FUNGI - 0 PLANTS - 59 VIRUSES - 0 OTHER EUKARYOTES - 269 (SOURCE NCBI BLINK) |
AT2G43010 | ExperimentalReconstituted Complexprotein complementation assay | FSW = 0.3429
| Class D:nucleus (p = 0.78) | PIF4 (PHYTOCHROME INTERACTING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G53720 | Experimentalpull down | FSW = 0.0625
| Unknown | CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G26945 | Experimentaltwo hybrid | FSW = 0.0395
| Unknown | KDR (KIDARI) TRANSCRIPTION REGULATOR |
AT5G47080 | Experimentaltwo hybrid | FSW = 0.0196
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT4G17640 | Experimentaltwo hybrid | FSW = 0.0523
| Unknown | CKB2 PROTEIN KINASE CK2 REGULATOR |
AT3G59060 | ExperimentalReconstituted Complexprotein complementation assayAffinity Capture-Western | FSW = 0.4571
| Unknown | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454