Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13430 - ( ubiquinol-cytochrome C reductase iron-sulfur subunit mitochondrial putative / Rieske iron-sulfur protein putative )

10 Proteins interacs with AT5G13430
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G07727

Experimental

FSW = 0.1422

Class B:

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

extracellular (p = 0.86)

 CYTOCHROME B (MTCYB) (COB) (CYTB)
AT5G05410

Experimental

FSW = 0.0627

Class B:

nucleus

mitochondrion

Class D:

mitochondrion (p = 0.82)

 DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT3G16890

Experimental

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

FSW = 0.2133

Unknown

 PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40)
AT5G40810

Predicted

in vitro

FSW = 0.2717

Class C:

mitochondrion

 CYTOCHROME C1 PUTATIVE
AT3G17910

Predicted

Affinity Capture-Western

FSW = 0.1817

Class C:

mitochondrion

 SURF1 (SURFEIT 1)
AT1G13120

Predicted

two hybrid

Synthetic Lethality

FSW = 0.1233

Unknown

 EMB1745 (EMBRYO DEFECTIVE 1745)
AT1G11800

Predicted

two hybrid

FSW = 0.0504

Unknown

 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G30460

Predicted

two hybrid

FSW = 0.0775

Unknown

 CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT5G09230

Predicted

two hybrid

FSW = 0.0298

Unknown

 SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT1G80670

Predicted

two hybrid

FSW = 0.0832

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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