Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33710 - ( pathogenesis-related protein putative )
106 Proteins interacs with AT4G33710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3416
| Class C:extracellular | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0220
| Class C:extracellular | ATPRB1 |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3576
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G19980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1100
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.1415
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G11260 | Predictedinterologs mapping | FSW = 0.0229
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G45170 | PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | ATATG8E MICROTUBULE BINDING |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.3255
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT5G10350 | Predictedbiochemical | FSW = 0.0447
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0369
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2975
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1079
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT5G09660 | PredictedAffinity Capture-MS | FSW = 0.0791
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0264
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT1G11870 | PredictedPhenotypic Suppression | FSW = 0.0482
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.0923
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2948
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G06290 | Predictedbiochemical | FSW = 0.0398
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0320
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.1287
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G03650 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT3G44610 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationAffinity Capture-WesternCo-purification | FSW = 0.1584
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.2803
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G10070 | PredictedSynthetic Lethality | FSW = 0.0498
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G23740 | Predictedtwo hybridReconstituted ComplexPhenotypic Suppression | FSW = 0.0121
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT2G43030 | PredictedPhenotypic Suppression | FSW = 0.0470
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT1G45145 | PredictedPhenotypic Enhancement | FSW = 0.1080
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.2945
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2050
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G58640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2261
| Unknown | SELENOPROTEIN-RELATED |
AT1G04750 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0920
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3531
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G16180 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0940
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.1422
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G14350 | PredictedPhenotypic Enhancement | FSW = 0.0236
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G28860 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridColocalizationReconstituted ComplexAffinity Capture-WesternCo-purificationinterologs mapping | FSW = 0.1745
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.0745
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G72560 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purificationSynthetic Lethality | FSW = 0.1871
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT3G20970 | PredictedColocalization | FSW = 0.0526
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G01020 | PredictedPhenotypic Enhancement | FSW = 0.0406
| Unknown | ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE |
AT5G47630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1130
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2537
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.1547
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0981
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2446
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G29540 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1043
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G05170 | PredictedPhenotypic Suppression | FSW = 0.0383
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G52300 | PredictedPhenotypic Suppression | FSW = 0.0423
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT1G19730 | PredictedReconstituted Complex | FSW = 0.0242
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G16420 | PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2293
| Unknown | UNKNOWN PROTEIN |
AT1G26320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityColocalizationReconstituted ComplexAffinity Capture-WesternCo-purificationinterologs mapping | FSW = 0.1932
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.3778
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G68530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalization | FSW = 0.2377
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G77780 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1172
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.3751
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2883
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3281
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1957
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.1156
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G04710 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.1016
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.2687
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.3621
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.1086
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.0456
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1284
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.2963
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3823
| Unknown | HISTONE H4 |
AT4G04700 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternColocalization | FSW = 0.1372
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G17380 | PredictedAffinity Capture-MS | FSW = 0.2460
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G21480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0915
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0073
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G17130 | PredictedReconstituted Complex | FSW = 0.0172
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G31170 | PredictedPhenotypic Enhancement | FSW = 0.0909
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.2785
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G78970 | PredictedPhenotypic Enhancement | FSW = 0.0828
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.2779
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2395
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT2G48100 | PredictedPhenotypic Suppression | FSW = 0.0984
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G24495 | PredictedPhenotypic Enhancement | FSW = 0.0593
| Unknown | MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.3313
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2083
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G59540 | PredictedPhenotypic Suppression | FSW = 0.1060
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G62760 | PredictedAffinity Capture-Western | FSW = 0.0939
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G19560 | PredictedPhenotypic Enhancement | FSW = 0.0894
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3444
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G27130 | PredictedPhenotypic Enhancement | FSW = 0.0696
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | PredictedPhenotypic Suppression | FSW = 0.0672
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G35520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.1280
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.0777
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G04800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2367
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G13480 | PredictedAffinity Capture-MS | FSW = 0.0594
| Unknown | FY PROTEIN BINDING |
AT5G15070 | PredictedReconstituted Complex | FSW = 0.0310
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2838
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20340 | PredictedPhenotypic Suppression | FSW = 0.0589
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3457
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G42720 | PredictedPhenotypic Enhancement | FSW = 0.0894
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.0764
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G49560 | PredictedPhenotypic Enhancement | FSW = 0.0618
| Unknown | UNKNOWN PROTEIN |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.0981
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1559
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.2826
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454