Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49560 - ( unknown protein )
27 Proteins interacs with AT5G49560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | Predictedtwo hybrid | FSW = 0.0460
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.0550
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G12900 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.1346
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G32090 | PredictedPhenotypic Enhancement | FSW = 0.0618
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G25340 | PredictedPhenotypic Suppression | FSW = 0.0447
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1034
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0618
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0824
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.0665
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0319
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G19220 | PredictedPhenotypic Enhancement | FSW = 0.0430
| Unknown | UNKNOWN PROTEIN |
AT2G28360 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.1085
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.1190
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G37670 | PredictedAffinity Capture-MS | FSW = 0.0553
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.0572
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.0580
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.0163
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0799
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0364
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT2G31020 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.0114
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT4G36050 | PredictedAffinity Capture-Western | FSW = 0.1007
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G60340 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G67540 | PredictedPhenotypic Enhancement | FSW = 0.0623
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454